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  1. AngleBetweenHelices
  2. Angle between domains
  3. Annocryst
  4. Annotate v
  5. Annotation wizard
  6. Antialias
  7. Apbsplugin
  8. Apropos
  9. Assembly
  10. Async builds
  11. Atom name wildcard
  12. Attach
  13. AutoMultiFit
  14. Auto arg
  15. Auto show classified
  16. Auto zoom
  17. Autodock plugin
  18. Average b
  19. Axes
  20. Axpymol
  21. Azahar
  22. B2transparency
  23. Backface cull
  24. Backward
  25. Ball and Stick
  26. BbPlane
  27. Bg Color
  28. Bg gradient
  29. Bg rgb
  30. Bg rgb bottom
  31. Bg rgb top
  32. Biochemistry student intro
  33. BiologicalUnit
  34. BiologicalUnit/Quat
  35. Blender
  36. Bnitools
  37. Bond
  38. Bondpack
  39. Bounding Box
  40. Builder
  41. Button
  42. Button mode name
  43. CASTp
  44. CBC
  45. CCTBX
  46. CCTBX-fedora32
  47. CGOCylinder
  48. CGO Text
  49. CMPyMOL
  50. CMYK
  51. COLLADA
  52. Cache
  53. CalcArea
  54. Capture
  55. Cart to frac
  56. Cartoon
  57. Cartoon Helix Settings
  58. Cartoon all alt
  59. Cartoon color
  60. Cartoon cylindrical helices
  61. Cartoon discrete colors
  62. Cartoon dumbbell length
  63. Cartoon dumbbell radius
  64. Cartoon dumbbell width
  65. Cartoon fancy sheets
  66. Cartoon flat cycles
  67. Cartoon flat sheets
  68. Cartoon gap cutoff
  69. Cartoon helix radius
  70. Cartoon highlight color
  71. Cartoon nucleic acid color
  72. Cartoon nucleic acid mode
  73. Cartoon oval length
  74. Cartoon oval quality
  75. Cartoon oval width
  76. Cartoon putty radius
  77. Cartoon putty scale max
  78. Cartoon putty scale min
  79. Cartoon putty transform
  80. Cartoon rect length
  81. Cartoon rect width
  82. Cartoon ring mode
  83. Cartoon ring transparency
  84. Cartoon round helices
  85. Cartoon sampling
  86. Cartoon side chain helper
  87. Cartoon smooth loops
  88. Cartoon transparency
  89. Caver2
  90. Caver3
  91. Cavity cull
  92. Ccp4 contact
  93. Ccp4 ncont
  94. Ccp4 pisa
  95. Cd
  96. Cealign
  97. Cealign plugin
  98. Cell
  99. Center
  100. Center of mass
  101. Centerofmass
  102. Centroid
  103. CgoCircle
  104. Cgo arrow
  105. Cgo grid
  106. CheatSheet
  107. Check Key
  108. Chem comp cartn use
  109. Chempy
  110. Cheshift
  111. Chromadepth
  112. Cif keepinmemory
  113. Cif use auth
  114. Clip
  115. Cls
  116. Cluster Count
  117. Cluster mols
  118. Collada geometry mode
  119. CollapseSel
  120. Color
  121. ColorByDistance
  122. ColorByGroup
  123. ColorByRMSD
  124. Color By Mutations
  125. Color Objects
  126. Color Values
  127. Color by conservation
  128. Color h
  129. Colorama
  130. Colorblindfriendly
  131. Colorbydisplacement
  132. Command Line Options
  133. Commands
  134. Config Mouse
  135. Connect cutoff
  136. Connect mode
  137. ConnectedCloud
  138. Consistent View/ Map Inspect
  139. Contact Surface
  140. Contact map visualizer
  141. Copy
  142. Count Atoms
  143. Count Frames
  144. Count States
  145. Count molecules in selection
  146. Covers
  147. Create
  148. CreateAtom
  149. CreateSecondaryStructure
  150. Cubes
  151. Current events
  152. Cycle Valence
  153. Cycle valence
  154. Cylinder shader ff workaround
  155. Cyspka
  156. DSSP Stride
  157. DYNMAP
  158. Dash Gap
  159. Dash Length
  160. Dash Radius
  161. Dash Round Ends
  162. Dash Width
  163. Dash color
  164. Dash gap
  165. Dash length
  166. Dash round ends
  167. Dash width
  168. Defer builds mode
  169. Dehydron
  170. Delete
  171. Deprotect
  172. Depth cue
  173. Deselect
  174. Disable
  175. Discrete objects
  176. Displacementmap
  177. Display CCP4 Maps
  178. Display SiteMap Maps
  179. Display scale factor
  180. Displaying Biochemical Properties
  181. Distance
  182. DistancesRH
  183. Distancetoatom
  184. DivScore
  185. Dot radius
  186. Dot width
  187. Dots
  188. Draw
  189. DrawBoundingBox
  190. DrawGridBox
  191. Draw Protein Dimensions
  192. Dss
  193. Dssp
  194. Dssr block
  195. Dump
  196. Dump2CGO
  197. Dunbrack Rotamers
  198. Dynamic mesh
  199. DynoPlot
  200. EMovie
  201. EZ-Viz
  202. Edit
  203. Edit Keys
  204. Editing atoms
  205. Elbow angle
  206. Ellipsoid
  207. Ellipsoid color
  208. Ellipsoid quality
  209. Ellipsoid scale
  210. Ellipsoid transparency
  211. Ellipsoids
  212. Enable
  213. Ending
  214. Ex
  215. Example Scripts
  216. Examples of nucleic acid cartoons
  217. Expand To Surface
  218. Extend
  219. Extend (selection operator)
  220. Extensions
  221. Extra fit
  222. Extract
  223. Fab
  224. Feedback
  225. Fetch
  226. FetchLocal
  227. Fetch Host
  228. Fetch Path
  229. Fetch type default
  230. Fetching scripts
  231. Field Of View
  232. FilterByMol
  233. FindObjectsNearby
  234. FindSurfaceResidues
  235. Find buried waters
  236. Find pairs
  237. Find symbol
  238. Findseq
  239. Fit
  240. Flag
  241. Flatten obj
  242. Fnab
  243. FocalBlur
  244. Focus alignment
  245. Fog
  246. Fog start
  247. Fork
  248. Forster distance calculator
  249. Forward
  250. Fragment
  251. Frame
  252. Frame slider
  253. Full Screen
  254. Full screen
  255. Fuse
  256. GLSL Shaders
  257. GROMACS Plugin
  258. Gallery
  259. Geo Measures Plugin
  260. Geometry export mode
  261. Get
  262. GetNamesInSel
  263. GetRotationMatrix
  264. Get Angle
  265. Get Color Indices
  266. Get Coordinates I
  267. Get Coordinates II
  268. Get Dihedral
  269. Get Distance
  270. Get Extent
  271. Get Frame
  272. Get Model
  273. Get Names
  274. Get Pdbstr
  275. Get Position
  276. Get State
  277. Get Symmetry
  278. Get Title
  279. Get Type
  280. Get Version
  281. Get View
  282. Get chains
  283. Get color index
  284. Get color tuple
  285. Get colors
  286. Get coords
  287. Get coordset
  288. Get fastastr
  289. Get legal name
  290. Get names of type
  291. Get object list
  292. Get object matrix
  293. Get raw alignment
  294. Get raw distances
  295. Get sasa relative
  296. Get session
  297. Get type
  298. Get unused name
  299. Git admin
  300. Git authors
  301. Git include
  302. Git install scripts
  303. Git intro
  304. Git script guidelines
  305. GoogleSearch
  306. Gradient
  307. Grepsel
  308. Grepset
  309. Grid max
  310. Grid mode
  311. Grid slot
  312. Group
  313. Gyration tensor
  314. H Add
  315. H Fill
  316. Half bonds
  317. Hash max
  318. Hbplus
  319. Helicity check
  320. Hide
  321. Hide underscore names
  322. HighlightAlignedSS
  323. Homology Modeling
  324. Huge surfaces
  325. Id Atom
  326. Ideas
  327. Identify
  328. Ignore case
  329. Ignore case chain
  330. ImmersiveViz
  331. Inchoates pymolrc
  332. Index
  333. Indicate
  334. Inertia tensor
  335. InterfaceResidues
  336. Internal Gui
  337. Internal feedback
  338. Internal gui
  339. Internal gui control size
  340. Internal gui mode
  341. Internal gui width
  342. Internal prompt
  343. Intra fit
  344. Intra rms
  345. Intra rms cur
  346. Intra xfit
  347. Invert
  348. Isodot
  349. Isolevel
  350. Isomesh
  351. Isoslider
  352. Isosurface
  353. Iterate
  354. Iterate sses
  355. Join states
  356. Jump
  357. Jupyter
  358. Kabsch
  359. Key Wait
  360. Keyboard Shortcut Menu
  361. Label
  362. Label anchor
  363. Label angle digits
  364. Label color
  365. Label dihedral digits
  366. Label distance digits
  367. Label font id
  368. Label outline color
  369. Label position
  370. Label shadow mode
  371. Label size
  372. LatticeGenerator
  373. Launching From a Script
  374. Launching PyMOL
  375. Leap Motion
  376. LigAlign
  377. Light
  378. Light count
  379. Line color
  380. Line smooth
  381. Line width
  382. Lines
  383. Linux Install
  384. Lisica
  385. ListSelection2
  386. List Colors
  387. List Secondary Structures
  388. List Selection
  389. Load
  390. LoadDir
  391. Load Model
  392. Load Traj
  393. Load aln
  394. Load brick
  395. Load coords
  396. Load img stack
  397. Load new B-factors
  398. Loadall
  399. Ls
  400. MAC Install
  401. MOLE 2.0: advanced approach for analysis of biomacromolecular channels
  402. MSMS
  403. MacOSX-specific .pymolrc file
  404. Main Page
  405. MakeVinaCommand
  406. Make Figures
  407. Making Movies
  408. Map Double
  409. Map Set Border
  410. Map Trim
  411. Map auto expand sym
  412. Map double
  413. Map new
  414. Map set
  415. Mappend
  416. Mark center
  417. Mask
  418. Matrix Copy
  419. Matrix mode
  420. Matrix reset
  421. Max ups
  422. Mclear
  423. Mcsalign
  424. Mdo
  425. Mdump
  426. Measure Distance
  427. Mem
  428. Mesh
  429. Mesh color
  430. Mesh lighting
  431. Mesh mode
  432. Mesh negative visible
  433. Mesh quality
  434. Mesh type
  435. Mesh width
  436. Meter Reset
  437. Middle
  438. Min mesh spacing
  439. Minimize ob
  440. Mmatrix
  441. Mobile
  442. Model Space and Camera Space
  443. Modeling and Editing Structures
  444. Modevectors
  445. Mole
  446. Molecular Sculpting
  447. Monitor file continuously
  448. Monitors Hardware Options
  449. Morph
  450. Morpheasy
  451. Morpheasy linear
  452. Motif
  453. Mouse Controls
  454. Mouse Settings
  455. Mouse modes
  456. Move
  457. Movie.produce
  458. Movie.roll
  459. MovieSchool
  460. MovieSchool 1
  461. MovieSchool 2
  462. MovieSchool 3
  463. MovieSchool 4
  464. MovieSchool 5
  465. MovieSchool 6
  466. Movie color fade
  467. Movie fade
  468. Movie fps
  469. Movie from scenes
  470. Movie loop
  471. Movie panel
  472. Movie pdf
  473. Movit
  474. Mplay
  475. Mpng
  476. Mset
  477. Msms surface
  478. Mstop
  479. MtsslDock
  480. MtsslPlotter
  481. MtsslTrilaterate
  482. MtsslWizard
  483. Multifilesave
  484. Multisave
  485. Mutagenesis
  486. Mview
  487. Named Atom Selections
  488. Nb spheres
  489. Nmr cnstr
  490. Nonstandard Amino Acids
  491. Normalize ccp4 maps
  492. NsSNP Loader
  493. Nuccyl
  494. Nucleic Acid Sequence
  495. O
  496. OLD TOPTOC
  497. ObjectByArrows
  498. ObjectFocus
  499. Object Matrix
  500. Objects and Selections

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