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Half bonds

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The half_bonds setting determines whether a half bond will be drawn between visible and hidden atoms.

Stick representation of a glycine showing half bond.
Stick representation of a glycine without half bond (default).


set half_bonds, boolean

Where boolean may be one of:

0 0.0 off false


1 1.0 on true


To turn on half bonds:

set half_bonds, 1

To turn off half bonds (default):

set half_bonds, off