This is a read-only mirror of

Color by conservation

From PyMOL Wiki
Jump to navigation Jump to search
Type Python Script
Author(s) Jason Vertrees
License Free
This code has been put under version control in the project Pymol-script-repo


This script reads an alignment object and colors the protein objects in the alignment by the sequence conservation found in the alignment.


Example Usage

import color_by_conservation
# get some kinases
fetch 1opk 3dtc 3p86 2eva 3efw, async=0
# turn on the sequence viewer
set seq_view

# align them into the "algn" object
for x in cmd.get_names(): cmd.align(x, "3efw and c. A", object="algn")
# color
color_by_conservation aln=algn, as_putty=1