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  1. Colorbydisplacement
  2. Command Line Options
  3. Commands
  4. Config Mouse
  5. Connect cutoff
  6. Connect mode
  7. ConnectedCloud
  8. Consistent View/ Map Inspect
  9. Contact Surface
  10. Contact map visualizer
  11. Copy
  12. Count Atoms
  13. Count Frames
  14. Count States
  15. Count molecules in selection
  16. Covers
  17. Create
  18. CreateAtom
  19. CreateSecondaryStructure
  20. Cubes
  21. Current events
  22. Cycle Valence
  23. Cycle valence
  24. Cylinder shader ff workaround
  25. Cyspka
  26. DSSP Stride
  27. DYNMAP
  28. Dash Gap
  29. Dash Length
  30. Dash Radius
  31. Dash Round Ends
  32. Dash Width
  33. Dash color
  34. Dash gap
  35. Dash length
  36. Dash round ends
  37. Dash width
  38. Defer builds mode
  39. Dehydron
  40. Delete
  41. Deprotect
  42. Depth cue
  43. Deselect
  44. Disable
  45. Discrete objects
  46. Displacementmap
  47. Display CCP4 Maps
  48. Display SiteMap Maps
  49. Display scale factor
  50. Displaying Biochemical Properties
  51. Distance
  52. DistancesRH
  53. Distancetoatom
  54. DivScore
  55. Dot radius
  56. Dot width
  57. Dots
  58. Draw
  59. DrawBoundingBox
  60. DrawGridBox
  61. Draw Protein Dimensions
  62. Dss
  63. Dssp
  64. Dssr block
  65. Dump
  66. Dump2CGO
  67. Dunbrack Rotamers
  68. Dynamic mesh
  69. DynoPlot
  70. EMovie
  71. EZ-Viz
  72. Edit
  73. Edit Keys
  74. Editing atoms
  75. Elbow angle
  76. Ellipsoid
  77. Ellipsoid color
  78. Ellipsoid quality
  79. Ellipsoid scale
  80. Ellipsoid transparency
  81. Ellipsoids
  82. Enable
  83. Ending
  84. Ex
  85. Example Scripts
  86. Examples of nucleic acid cartoons
  87. Expand To Surface
  88. Extend
  89. Extend (selection operator)
  90. Extensions
  91. Extra fit
  92. Extract
  93. Fab
  94. Feedback
  95. Fetch
  96. FetchLocal
  97. Fetch Host
  98. Fetch Path
  99. Fetch type default
  100. Fetching scripts

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