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  1. 0.99beta11
  2. 2. Translucent Surfaces
  3. 2to3
  4. 3DNA
  5. 3Dstrut
  6. 3d pdf
  7. AAindex
  8. AKMT Lys pred
  9. APBS
  10. APBS Electrostatics Plugin
  11. Aa codes
  12. Abort
  13. About
  14. Advanced Coloring
  15. Advanced Scripting
  16. Alias
  17. Align
  18. All states
  19. AlphaToAll
  20. Ambient
  21. AngleBetweenHelices
  22. Angle between domains
  23. Annocryst
  24. Annotate v
  25. Annotation wizard
  26. Antialias
  27. Apbsplugin
  28. Apropos
  29. Assembly
  30. Async builds
  31. Atom name wildcard
  32. Attach
  33. AutoMultiFit
  34. Auto arg
  35. Auto show classified
  36. Auto zoom
  37. Autodock plugin
  38. Average b
  39. Axes
  40. Axpymol
  41. Azahar
  42. B2transparency
  43. Backface cull
  44. Backward
  45. Ball and Stick
  46. BbPlane
  47. Bg Color
  48. Bg gradient
  49. Bg rgb
  50. Bg rgb bottom

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