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When saving a PDB file, the [[pdb_conect_all]] settings controls whether PyMOL writes C ...an object-level setting, to again write CONECT records for all bonds when saving that object to a PDB file.

...suppress this feature, set <tt>pdb_use_ter_records</tt> value to 0 before saving protein molecules.

The [[pse_export_version]] setting switches to a legacy format when saving PSEs, so far possible. The value is the floating point number representatio

...e_background, off, ray tracing, antialiasing, background colors, etc. I'm saving the files as xxx.png and opening them either in Canvas or in Illustrator, a

== Saving default locations ==

* When saving a session file, then "state" has no effect.

This command is very useful for saving the orientation of a scene for later. Authors of molecular movies may find

===Saving an image=== '''Tip:''' Using the ''[[ray]]'' command before saving an image will create a higher quality version with shadows, etc. This can t

==Saving with transformed coordinates==

==Saving with transformed coordinates==

...l.cmd''' namespace. The save command will have enhanced PDB output, namely saving of secondary structure and crystal information, if available. The fetch com

== Saving default locations ==

* Scene->Optmize (before saving scenes; use before optimizing)

then the PyMOL GUI may not have caught up to the correct place before saving the scene information.