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• 3d pdf
  ...t to formats (vrml2 and idtf) that can be converted to a [[:File:Pymol.pdf|3D PDF]] (will not work with most PDF browser plugins; must be downloaded and ...forge.net/projects/u3d/files/Universal%203D%20Sample%20Software/ Universal 3D Sample Software - u3d converter - IDTF to U3D]
  5 KB (880 words) - 21:08, 9 July 2015
• Stereo 3D Display Options
  This page is for aggregating the latest know-how and links to current Stereo 3D display options best suited for molecular graphics applications like PyMOL. ...tter glasses. For decades, this has been the standard solution for stereo 3D molecular visualization on the desktop.
  15 KB (2,331 words) - 04:22, 12 November 2018

Page text matches

• Fragment
  [[fragment]] retrieves a 3D structure from the fragment library, which is currently pretty meager (just
  472 bytes (62 words) - 02:16, 28 March 2014
• 3d pdf
  ...t to formats (vrml2 and idtf) that can be converted to a [[:File:Pymol.pdf|3D PDF]] (will not work with most PDF browser plugins; must be downloaded and ...forge.net/projects/u3d/files/Universal%203D%20Sample%20Software/ Universal 3D Sample Software - u3d converter - IDTF to U3D]
  5 KB (880 words) - 21:08, 9 July 2015
• ImmersiveViz
  ...cule in a direction opposite to the motion of the user's head we provide a 3D experience; to the user, it appears as if they are 'peeking' around the sid ...e Wii remote can be used as an high degree-of-freedom input device (i.e. a 3d mouse).<br>
  2 KB (327 words) - 03:06, 28 March 2014
• 3Dstrut
  ...m PyMOL. The plugin generates struts at optimal positions and thus enables 3D printing of any structure visualized using PyMOL. This software is distribu
  644 bytes (85 words) - 02:55, 16 August 2021
• Mark center
  You could also use this to setup arbitrary CGOs (points, lines, etc) in 3D space.
  717 bytes (97 words) - 06:13, 6 March 2017
• Stereo 3D Display Options
  This page is for aggregating the latest know-how and links to current Stereo 3D display options best suited for molecular graphics applications like PyMOL. ...tter glasses. For decades, this has been the standard solution for stereo 3D molecular visualization on the desktop.
  15 KB (2,331 words) - 04:22, 12 November 2018
• Minimize ob
  # minimize structure to get 3D conformation
  1 KB (148 words) - 03:23, 29 April 2019
• Annocryst
  ...extends the functionality of PyMOL to support collaborative annotation of 3D crystallographic models. It is implemented as a plugin to PyMOL that provid
  2 KB (215 words) - 03:04, 6 February 2017
• OLD TOPTOC
  ## '''[[:Category:Stereo 3D Display|Stereo 3D Display]]''' -- wrong place
  4 KB (451 words) - 02:16, 28 March 2014
• XFree86 Configuration
  [[Category:Stereo 3D Display|XFree68Config]]
  1 KB (116 words) - 04:07, 28 March 2014
• Monitors Hardware Options
  * FP2141SB-BK (A high-refresh display for stereo 3D graphics) -- What Warren uses (at ''1440x1050''). Also see [[Stereo 3D Display Options]]
  3 KB (512 words) - 02:16, 28 March 2014
• Volume
  ...object from a map object. The data (3D scalar fields) are shown as a true 3D object using coloring and transparencies defined by the user to illustrate
  3 KB (420 words) - 06:13, 6 March 2017
• COLLADA
  '''COLLADA''' is an XML-based open 3D graphics format, designed to be used as an interchange format among various ...nce the original orientation is changed, the planes would look less like a 3D volume projection, and more like a stack of flat images slicing through the
  4 KB (569 words) - 05:32, 19 August 2019
• TOPTOC
  # '''[[:Category:Stereo 3D Display|Stereo 3D Display]]'''
  6 KB (682 words) - 21:17, 28 March 2014
• Lisica
  LiSiCA is a software for 2D and 3D ligand based virtual screening. It uses a fast maximum clique algorithm to conformer will be shown in the final output for the 3D screening option.
  10 KB (1,511 words) - 02:19, 19 September 2016
• Huge surfaces
  # === now create a pseudo-fcalc map (a 3D volumetric scalar field) ===
  2 KB (273 words) - 18:09, 3 April 2018
• Editing atoms
  axis can be either the letter x,y,z or a 3D vector [x,y,z]
  2 KB (350 words) - 02:16, 28 March 2014
• 3DNA
  - Raster 3D [http://skuld.bmsc.washington.edu/raster3d/raster3d.html]
  3 KB (388 words) - 05:26, 8 February 2016
• Blender
  An attempt at using Blender, an open-source, free, 3D modeling software to render, pose and animate objects exported from Pymol. * Blender is an extremely capable 3D graphics program and perhaps the only FOSS program capable of taking on sim
  7 KB (1,153 words) - 18:52, 31 October 2015
• DynoPlot
  ...up to draw the plot directly in the PyMol window (allowing for both 2D and 3D style plots), but because I couldn't figure out how to billboard CGO object
  2 KB (368 words) - 02:18, 28 March 2014
• Older News
  * New Plugin: [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. ...g Nvidia GeForce video cards] (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
  13 KB (1,965 words) - 03:24, 10 December 2018
• Kabsch
  accept coordinates in the form an array of 3D vectors/lists and then pairs may become 3D (r1, r2, weight) or I may add another
  26 KB (4,053 words) - 03:23, 29 April 2019
• PyMod
  ...target-template sequence alignment and model building) in order to build a 3D atomic model of a target protein (or protein complex). Additionally, PyMod
  4 KB (539 words) - 04:05, 7 December 2020
• Align
  * graphical representation of aligned atom pairs as lines in the 3D viewer
  4 KB (558 words) - 04:50, 11 December 2017
• Ideas
  * R (statistics): PyMOL a 3D viewer environment for visualizating & manipulating large statistical data * Provide a 2D chemical depiction of the current 3D view.
  17 KB (2,322 words) - 01:04, 19 October 2015
• Command Line Options
  ||'''.cc1, .cc2''' || ChemDraw 3D cartesian coordinate file
  5 KB (729 words) - 04:31, 26 June 2017
• Practical Pymol for Beginners
  ...is the PyMOL Viewer, which is where all the magic happens. In the Viewer, 3D models are displayed, and the user interacts (eg rotates) and manipulates t The objects that PyMOL renders in 3D are loaded from coordinate files that describe (in great detail) locations
  12 KB (1,971 words) - 02:46, 3 April 2017
• CMPyMOL
  ...software to molecular visualization program PyMOL. It combines the protein 3D visualization capabilities of PyMOL and the protein's 2D contact map with a
  8 KB (1,116 words) - 05:42, 31 May 2016
• Modeling and Editing Structures
  (axis can be either the letter x,y,z or a 3D vector [x,y,z])
  7 KB (1,076 words) - 04:40, 14 December 2015
• AKMT Lys pred
  This script should try to make an analysis this for 3D, with residues up and downstream in angstrom distance to the residue of int
  8 KB (1,074 words) - 02:39, 24 July 2017
• Biochemistry student intro
  * [[3d_pdf | 3d protein image in pdf]]
  17 KB (2,610 words) - 19:16, 20 May 2014
• PLoS
  The possible types of 3D figures and animations are enumerated in Table 1. Below the symbol for each
  41 KB (6,131 words) - 18:10, 31 October 2015