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• Dots
  Controls the dot radius when ray tracing (that is, it is apparent only after the sce * dot_solvent, default is off. This setting controls whether the dots are representing the vdW surface; when the setting is on,
  2 KB (396 words) - 02:18, 28 March 2014
• Surface proximity
  ...of atoms (not the entire molecule), then the [[surface_proximity]] setting controls whether triangles are shown which are between an included and an excluded a
  886 bytes (127 words) - 02:46, 3 April 2017
• Opaque background
  This setting controls how PyMOL renders the background. If this opaque setting is '''on''' then
  866 bytes (133 words) - 02:16, 28 March 2014
• Ray orthoscopic
  This setting controls whether ray-traced images are rendered with or without perspective. Note t
  1 KB (141 words) - 23:12, 7 April 2014
• Assembly
  When loading '''mmCIF''' structure files, the [[assembly]] setting controls whether PyMOL loads the asymmetric unit (assembly="") or a biological unit
  1 KB (155 words) - 02:19, 19 September 2016
• Stick ball
  The setting "stick_ball" controls whether bonded atoms are shown simply as joined sticks (set stick_ball, off
  963 bytes (152 words) - 01:44, 28 March 2014
• Smooth
  * ends = 0 or 1: controls whether or not the end states are also smoothed using a weighted asymmetric
  1 KB (145 words) - 01:22, 19 October 2015
• Pdb conect nodup
  The '''pdb_conect_nodup''' setting in pymol controls if duplicated connectivity record ([http://www.wwpdb.org/documentation/file
  1 KB (201 words) - 01:04, 19 October 2015
• Pdb conect all
  When saving a PDB file, the [[pdb_conect_all]] settings controls whether PyMOL writes CONECT records for all bonds, or only for HETATM bonds
  1 KB (175 words) - 05:01, 16 November 2015
• Window
  '''window''' controls the visibility of PyMOL's output window
  1 KB (149 words) - 03:15, 5 March 2018
• Scene
  * '''view''' = 1 or 0: controls whether the view is stored {default: 1} * '''color''' = 1 or 0: controls whether colors are stored {default: 1}
  6 KB (867 words) - 06:32, 11 January 2016
• Fetch Host
  The '''fetch_host''' setting controls from which PDB server you download files when using the [[fetch]] command.
  1 KB (204 words) - 04:50, 11 December 2017
• Normalize ccp4 maps
  The [[normalize_ccp4_maps]] settings (default: '''on''') controls whether or not PyMOL normalizes the data from a ccp4 map file '''upon loadi
  1 KB (193 words) - 20:24, 9 July 2015
• Cluster mols
  ...nd a user specified receptor. Additionally there are a number of keyboard controls for selecting and extracting compounds, as well as functionality for search This script also integrates keyboard controls which allows for WASD movement through the clusters as well as keyboard sho
  8 KB (1,334 words) - 18:29, 25 May 2022
• Surface quality
  This controls how well PyMOL draws surfaces. Lower values, like 0, are rough surface app
  1 KB (182 words) - 03:27, 14 November 2016
• Cif use auth
  ...ng '''mmCIF''' structure files, the [[cif_use_auth]] setting (default: on) controls whether the '''auth_*''' fields are used or not.
  2 KB (257 words) - 01:04, 19 October 2015
• Ignore case
  ..._case]] setting (default: '''on''', ''except in PyMOL 1.8.0.0 - 1.8.0.4'') controls whether PyMOL does case sensitive matching of atomic identifiers and select
  2 KB (243 words) - 03:47, 7 March 2016
• Mutagenesis
  the back-and-forth movie controls (lower right corner) to display (in white) each of the rotamers available f
  2 KB (287 words) - 02:21, 20 August 2018
• Collada geometry mode
  '''Collada geometry mode''' controls the types of <code>geometry</code> elements used in [[COLLADA]] output. Di
  2 KB (333 words) - 21:08, 9 July 2015
• 3d pdf
  toolbar, %same as `controls' toolbar, %same as `controls'
  5 KB (880 words) - 21:08, 9 July 2015

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