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News & Updates Official Release PyMOL v1.8.2 has been released on April 20, 2016. New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. Official Release PyMOL v1.8.0 has been released on Nov 18, 2015. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... HighlightAlignedSS This script will align and color the paired secondary structures of the two proteins a similar rainbow color. <source lang="python"> from pymol import cmd, util def highlight_aligned_ss(obj1,obj2,transform=1,quiet=1): """ DESCRIPTION Aligns two structures and colors their matching secondary structure elements with a matching rainbow colorscheme. USAGE highlight_aligned_ss obj1, obj2 If transform=0 then the proteins are not moved after alignment. EXAMPLES highlight_aligned_ss 1cll, 1ggz highlight_aligned_ss 1rlw, 1byn and state 1 SEE ALSO align JV 3-2-11 """ if not cmd.count_atoms(obj1): print "Error: Object 1 needs at least a few atoms to align." return None if not cmd.count_atoms(obj2): print "Error: Object 2 needs at least a few atoms to align." return None # align them uAln = cmd.get_unused_name("aln") cmd.align(obj1,obj2,object=uAln,transform=int(transform)) ..→

A Random PyMOL-generated Cover. See Covers.