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News & Updates Poll New protein/nucleic selection keywords for PyMOL - Tell us what you think! Official Release PyMOL v2.0 has been released on September 20, 2017. Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL Official Release PyMOL v1.8.6 has been released on March 9, 2017. Official Release PyMOL v1.8.4 has been released on October 4, 2016. New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. Official Release PyMOL v1.8.0 has been released on Nov 18, 2015. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... Cealign cealign superposition of 1c0mB and 1bco cealign aligns two proteins using the CE algorithm. It is very robust for proteins with little to no sequence similarity (twilight zone). For proteins with decent structural similarity, the super command is preferred and with decent sequence similarity, the align command is preferred, because these commands are much faster than cealign. This command is new in PyMOL 1.3, see the cealign plugin for manual installation. Usage cealign target, mobile [, target_state [, mobile_state [, quiet [, guide [, d0 [, d1 [, window [, gap_max [, transform [, object ]]]]]]]]]] Arguments Note: The mobile and target arguments are swapped with respect to the align and super commands. target = string: atom selection of target object mobile = string: atom selection of mobile object target_state = int: object state of target selection {default: 1} mobile_state = ..→

A Random PyMOL-generated Cover. See Covers.