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News & Updates Official Release PyMOL v1.8.4 has been released on October 4, 2016. New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. Official Release PyMOL v1.8.0 has been released on Nov 18, 2015. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... Surface proximity When showing the molecular surface of a subset of atoms (not the entire molecule), then the surface_proximity setting controls whether triangles are shown which are between an included and an excluded atom. Values surface_proximity=on: (default) Show all triangles which have at least one vertex belonging to the atom selection. In this case colors from hidden atoms can leak into the open surface edge. surface_proximity=off: Show only triangles where all three vertices belong to the atom selection. Example This example demonstrates the color "leaking" from atoms which don't belong to the surface selection. fetch 5hpr, async=0 color red color yellow, chain B show surface, chain B set surface_proximity, off See Also surface_smooth_edges surface representation

A Random PyMOL-generated Cover. See Covers.