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News & Updates Official Release PyMOL v2.1 has been released on March 13, 2018. Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll! Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... Select sites Type Python Script Download select_sites.py Author(s) Thomas Holder & Troels Linnet License BSD-2-Clause This code has been put under version control in the project Pymol-script-repo select_sites make named selections from SITE, LINK, SSBOND, HET records. A super fast way to annotate the protein, according to the authors input i pdb file. See: http://www.wwpdb.org/procedure.html#toc_10 For instance, trypsin (http://www.rcsb.org/pdb/files/1SGT.pdb?headerOnly=YES): SITE 1 CAT 3 HIS A 57 ASP A 102 SER A 195 SITE 1 AC1 6 ASP A 165 ALA A 177A GLU A 180 GLU A 230 SITE 2 AC1 6 HOH A 259 HOH A 261 This requires that the authors have performed annotation in the pdb file. Usage import select_sites select_sites [ selection [, filename [, prefix [, nice [, quiet ]]]]] nice = 0 or 1: make colored sticks representation for sites {default :1} Example fetch 1sgt, async=0 import select_sites select_sites Or fetch and select_sites in one ..→

A Random PyMOL-generated Cover. See Covers.