Main Page

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

To request a new account, email SBGrid at: accounts (@) sbgrid dot org

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates Official Release PyMOL v1.8.4 has been released on October 4, 2016. New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. Official Release PyMOL v1.8.0 has been released on Nov 18, 2015. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... Get sasa relative get_sasa_relative calculates the relative per-residue solvent accessible surface area and optionally labels and colors residues. The value is relative to full exposure of the residue, calculated by removing all other residues except its two next neighbors, if present. The command loads a value beteween 0.0 (fully buried) and 1.0 (fully exposed) into the b-factor property, available in iterate, alter and label as b. New in Incentive PyMOL 1.8 and Open-Source PyMOL 2.1 Changed in PyMOL 2.6: Added subsele argument Usage get_sasa_relative [ selection [, state [, vis [, var [, quiet [, outfile [, subsele ]]]]]]] Example fetch 1ubq get_sasa_relative polymer Side-chain exposure, including C-alpha atom, using subsele argument (new in PyMOL 2.6): get_sasa_relative polymer, subsele=sidechain guide See Also get_area

A Random PyMOL-generated Cover. See Covers.