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• Cif keepinmemory
  ...rsed file is kept in memory and made accessible like a dictionary from the Python API. <syntaxhighlight lang="python">
  957 bytes (125 words) - 03:11, 1 April 2019
• Get Coordinates I
  ...are several ways to extract or load atomic coordinates in PyMOL using the python API. <source lang="python">
  3 KB (407 words) - 07:02, 3 January 2016
• Contact map visualizer
  * [http://wiki.python.org/moin/TkInter Tkinter] (optional and usually included with PyMOL) sudo apt-get install python-tk python-imaging python-pygame
  4 KB (589 words) - 03:43, 6 December 2021
• Inertia tensor
  |type = Python Module <source lang="python">
  981 bytes (140 words) - 02:16, 28 March 2014
• Transform selection
  ...estCOM2 is for molecule two. '''pyU''' becomes '''rotMat'''. The call in Python is then, <source lang="python">
  2 KB (349 words) - 20:24, 9 July 2015
• ColorByGroup
  *run this Python script inside PyMOL
  937 bytes (125 words) - 03:24, 10 December 2018
• Grepsel
  Create selections matching motifs, using python regular expression syntax. <source lang="python">
  3 KB (416 words) - 03:06, 28 March 2014
• CMPyMOL
  * Python 2.7 * Python module dependency
  8 KB (1,116 words) - 05:42, 31 May 2016
• Pymolrc
  ...file, if it exists. This is simply a script in PyMOL command syntax or in python syntax, depending on the suffix.<br> * Files ending on '''.py''' (or .pym) will be parsed as python scripts, files ending on '''.pml''' or without suffix will be parsed as PyM
  3 KB (420 words) - 05:40, 25 July 2018
• Gyration tensor
  * [http://wiki.python.org/moin/TkInter Tkinter] and sudo apt-get install python-tk python-numpy
  3 KB (393 words) - 02:16, 28 March 2014
• Pymol.stored
  ...ds by default expose the '''pymol''' module namespace as the [https://docs.python.org/2/library/functions.html#eval globals] dictionary, so '''pymol.stored'' <syntaxhighlight lang="python">
  1 KB (163 words) - 02:44, 1 May 2017
• Practical Pymol for Beginners
  #* or just type, <source lang="python">fetch 1bl8</source> and you can skip the next step (see [[Fetch]] command) <source lang="python">
  12 KB (1,971 words) - 02:46, 3 April 2017
• CCTBX-fedora32
  CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible. cctbx.python setup.py install
  1 KB (184 words) - 02:13, 14 September 2020
• Plugin manager
  28 bytes (3 words) - 15:24, 26 November 2014
• Command Line Options
  -l file run python script in thread (spawn) -r file run python script
  5 KB (729 words) - 04:31, 26 June 2017
• Script Highlighting
  ...make it more clear when both reading and writing scripts. Highlighting of python scripts is available by default on most text editors, but support for highl
  2 KB (231 words) - 22:50, 21 April 2015
• Iterate
  ...local namespace exposes all atomic identifiers and properties as read-only Python variables. The global namespace by default is the '''pymol''' module namesp * '''expression''' = str: expression in Python language
  7 KB (1,031 words) - 04:03, 8 January 2018
• Movie color fade
  |type = Python Module <source lang="python">
  1 KB (204 words) - 15:24, 26 November 2014
• AngleBetweenHelices
  |type = Python Module <syntaxhighlight lang="python">
  2 KB (226 words) - 05:54, 9 January 2017
• Movie fade
  |type = Python Module <source lang="python">
  1 KB (193 words) - 02:46, 3 April 2017

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