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Quick Links
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Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.2 has been released on July 24, 2018.
POSF PyMOL Open-Source Fellowship program accepting applications for 2018-2019
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Stereo

The stereo command sets the current stereo mode.

Stereo mode is a convenient way to "see" 3D with two images from slightly different angles.

There are corresponding stereo and stereo_mode settings which are controlled by the stereo command, so you don't need to set them directly.

Usage

stereo [ toggle ]

Valid values for the toggle argument are: on, swap, off, quadbuffer, crosseye, walleye, geowall, sidebyside, byrow, bycolumn, checkerboard, custom, anaglyph, dynamic, clonedynamic (see also stereo_mode)

Example of 1ESR shown in cross-eyed stereo

Example

fetch 1ESR, async=0
as cartoon
set cartoon_smooth_loops
spectrum
bg white
stereo crosseye

See Also

A Random PyMOL-generated Cover. See Covers.