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News & Updates Official Release PyMOL v1.8.2 has been released on April 20, 2016. New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. Official Release PyMOL v1.8.0 has been released on Nov 18, 2015. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... Show bumps Type Python Module Download show_bumps.py Author(s) Thomas Holder License BSD-2-Clause This code has been put under version control in the project Pymol-script-repo The red discs in the image below show vdW overlaps or steric clashing. This script will create those bumps for your chosen molecule. This is a script to visualize VDW clashes, just like the mutagenesis wizard does. Posted on pymol-users mailing list. Usage show_bumps [ selection [, name ]] Related Settings sculpt_vdw_vis_max (default: 0.3) sculpt_vdw_vis_mid (default: 0.1) sculpt_vdw_vis_min (default: -0.1)

A Random PyMOL-generated Cover. See Covers.