This is a read-only mirror of pymolwiki.org

Main Page

From PyMOL Wiki
Revision as of 20:36, 13 March 2018 by Speleo3 (talk | contribs) (v2.1)
Jump to navigation Jump to search
hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.1 has been released on March 13, 2018.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Viewport

viewport changes the size of the viewing port--the visible openGL window (and thus the size of all png files subsequently output).

No API command can reliably retrieve the viewport dimensions under all circumstances. However, it is possible to obtain the dimensions using a third party image viewer like Gimp or OS X Preview:

  1. Save the current view as a png file ("png imagename.png").
  2. Determine the image dimensions using a viewer program.

These dimensions can be applied directly using the viewport command or the API.

USAGE

viewport width, height

PYMOL API

cmd.viewport(int width, int height)
A Random PyMOL-generated Cover. See Covers.