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(fellowship)
(PyMOL v2.2 release)
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|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
 
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| [https://pymol.org PyMOL v2.2 has been released] on July 24, 2018.
 
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! POSF
 
! POSF
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! New Plugin
 
| [[ProBiS_H2O|ProBiS H2O]] is a new plugin for identification of conserved waters in protein structures.
 
| [[ProBiS_H2O|ProBiS H2O]] is a new plugin for identification of conserved waters in protein structures.
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! Official Release
 
| [https://pymol.org PyMOL v2.1 has been released] on March 13, 2018.
 
 
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! Selection keywords
 
! Selection keywords

Revision as of 08:49, 24 July 2018

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.2 has been released on July 24, 2018.
POSF PyMOL Open-Source Fellowship program accepting applications for 2018-2019
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Python

Issuing the Python command will put you into a stateful pseudo-interactive Python session. Or, more simply it's stateful in that you can invoke the Python session write some code, end the session, then restart the session and your data will be saved (see Example 1). It's pseudo-interactive in that you don't get feedback until you type "python end," upon which your code is run the output appears.

This is a helpful command for testing different scripting or state-editing strategies for movie making.

USAGE

# start the session
python

# ...
# your Python code goes here
# ...

# end the session
python end


EXAMPLES

  • Start the session. Set x to 10. End the session. Restart the session and see if the value of x is recalled.
python
x = 10
print(x)
python end
python
print(x)
python end

Output:

10

Python Version

Python scripts and commands used within PyMOL can only be written using the current version of ..→

A Random PyMOL-generated Cover. See Covers.