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Revision as of 04:43, 1 May 2016

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v1.8.2 has been released on April 20, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Stereo

The stereo command sets the current stereo mode.

Stereo mode is a convenient way to "see" 3D with two images from slightly different angles.

There are corresponding stereo and stereo_mode settings which are controlled by the stereo command, so you don't need to set them directly.

Usage

stereo [ toggle ]

Valid values for the toggle argument are: on, swap, off, quadbuffer, crosseye, walleye, geowall, sidebyside, byrow, bycolumn, checkerboard, custom, anaglyph, dynamic, clonedynamic (see also stereo_mode)

Example of 1ESR shown in cross-eyed stereo

Example

fetch 1ESR, async=0
as cartoon
set cartoon_smooth_loops
spectrum
bg white
stereo crosseye

See Also

A Random PyMOL-generated Cover. See Covers.