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! colspan="3" style="font-weight: bold; font-size:120%; color: #333; background:#80AFFF; text-align:center" | Quick Links | ! colspan="3" style="font-weight: bold; font-size:120%; color: #333; background:#80AFFF; text-align:center" | Quick Links | ||
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− | | [[TOPTOC|'''Table of Contents''']] | + | | [[TOPTOC|'''Table of Contents''']] |
|| [[Special:Allpages|Index of all pages]] | || [[Special:Allpages|Index of all pages]] | ||
|| '''PyMOL Cheat Sheet: [[Media:PymolRef.pdf|PDF]] | [[CheatSheet|Wiki Page]] | || '''PyMOL Cheat Sheet: [[Media:PymolRef.pdf|PDF]] | [[CheatSheet|Wiki Page]] | ||
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− | | [[:Category:Tutorials|Tutorials]] | + | | [[:Category:Tutorials|Tutorials]] <font color='red'><b>!</b></font> |
|| [[:Category:Commands|Commands]] | || [[:Category:Commands|Commands]] | ||
|| '''Settings''': [[Settings|All]] | [[:Category:Settings|Documented]] | || '''Settings''': [[Settings|All]] | [[:Category:Settings|Documented]] | ||
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− | | [[:Category:Script_Library|'''Script Library''']] | + | | [[:Category:Script_Library|'''Script Library''']] <font color='red'><b>!</b></font> |
|| [[:Category:Plugins|'''Plugins''']] | || [[:Category:Plugins|'''Plugins''']] | ||
|| [[:Special:Categories| See All Categories]] | || [[:Special:Categories| See All Categories]] | ||
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+ | |- style="color: #333; font-weight:bold; font-size: 20px; text-align:center; padding: 10em;" | ||
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+ | <!-- | ||
+ | [http://www.pymol.org/ PyMOL 1.2] has been released! --> | ||
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! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | PyMOL | ! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | PyMOL | ||
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ '''[http://www.pymol.org/ PyMOL] 1.2 is out! |
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ Check out the artist who integrates PyMOL into [http://winkleman.com/artist/seriesview/1406/376 his work]. |
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ If you use the sequence viewer alot, or have lots of openGL text on the screen, try boosting your performance with [[Texture_fonts]]. |
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ '''PyMOL now integrates seamlessly with MS Powerpoint. See [[Axpymol]].''' |
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− | |valign="bottom" width="150px" style="padding: 0 20px 20px 0" |[[Image: | + | |valign="bottom" width="150px" style="padding: 0 20px 20px 0" |[[Image:Image_large.png|125px]] Another cover made with PyMOL.'''Movie made with Pymol of MD simulation of protein-prtein interaction'''is avialble inside pdf [[http://www.pymolwiki.org/index.php/File:SH3.pdf]] or High quality AVI [http://gepard.bioinformatik.uni-saarland.de/old_html/material/dl/SH3_large.avi] . |
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− | ! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | Scripts & | + | ! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | Scripts, Plugins & Tutorials |
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ [[MovieSchool]] — PyMOL Wiki's Movie School. Learn how to make movies in PyMOL! |
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ [[alphaToAll]] — Expands your desired alpha-carbon property down to all atoms in the residue. |
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ [[interfaceResidues]] — Finds interface residues in a complex. |
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ [[FindSurfaceResidues]] — Find and show (if you want) surface exposed resiues in PyMOL. |
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ [[ToGroup]] — Converts a multistate object into a group of single state objects. |
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ [[FindSeq]] — Find sequence or regular expression of amino acids in a protein. |
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− | | style="padding: | + | | style="padding: 2px 5px 10px 15px;"| ♦ [[Modevectors]] — creates arrow plots for normal mode analysis (NMA), NMR ensembles and other cases where you want to point out differences between similar objects. |
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ [[Pucker]] — finds the sugar pucker information (phase, amplitude, pucker) for a given selection. |
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− | |width="150px" style="padding: 0 20px 20px 0 | + | |valign="bottom" width="150px" style="padding: 0 20px 20px 0" |[[Image:DrawMinBB.png|165px]] Screenshot of [[DrawBoundingBox]] in action. |
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! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | Wiki | ! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | Wiki | ||
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ [[Label]]s page was thoroughly refurbished. |
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ The Wiki experienced a few moments of downtime due to system maintenance. The downtime was <10 minutes. |
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ '''Please note the "Go" and "Search" buttons in the search bar. They're not the same, and entering text and hitting ENTER is the same as using the "Go" button.''' Please try using the "Search" button; we're using a new search engine and it has cool new features. |
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ Documented a few more settings. Also, check out the cool, [[Huge_surfaces]] page for handling very large objects and representing them as surfaces, in PyMOL. |
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− | | style="padding: | + | | style="padding: 2px 5px 0px 15px;"| ♦ We got our '''2,000,000th''' page view! |
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− | |valign="bottom" width="150px" style="padding: 0 20px 20px 0; clear:right;" |[[Image: | + | |valign="bottom" width="150px" style="padding: 0 20px 20px 0; clear:right;" |[[Image:Science090410.jpg|125px]] Sample Cover from the [[Covers]] gallery. |
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Revision as of 15:54, 7 July 2009
We are the community-based support site for the popular molecular visualization program, PyMOL. |
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