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! style="font-weight: bold; font-size:120%; color: #333; background:#80AFFF;" | New Users
 
! style="font-weight: bold; font-size:120%; color: #333; background:#80AFFF;" | New Users
 
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| style="background:#E6EFFF; color:#333; font-size: 110%; padding: 4.5px"| New users are encouraged to join. Feel free to add any appropriate content; make an account and get started!
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| style="background:#E6EFFF; color:#333; font-size: 110%; padding: 4.5px"| New users are encouraged to [[Special:Userlogin|join]]. Feel free to add any appropriate content; make an account and get started!
 
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| [[TOPTOC|'''Table of Contents''']]
 
| [[TOPTOC|'''Table of Contents''']]
 
|| [[Special:Allpages|Index of all pages]]
 
|| [[Special:Allpages|Index of all pages]]
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|| [http://pymol.sf.net PyMOL] Homepage
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|| '''PyMOL Cheat Sheet: [[Media:PymolRef.pdf|PDF]] [[CheatSheet|Wiki Page]]
 
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| [[Practical_Pymol_for_Beginners|Beginner's Tutorial]]
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| [[:Category:Tutorials|Tutorials]]
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|| [[:Category:Commands|PyMol Commands]]
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|| [[:Category:Commands|Commands]]
 
|| '''Settings''': [[Settings|All]] [[:Category:Settings|Documented]]
 
|| '''Settings''': [[Settings|All]] [[:Category:Settings|Documented]]
 
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| [[:Category:FAQ|Frequently Asked Questions]]
 
| [[:Category:FAQ|Frequently Asked Questions]]
 
|| [[PyMolWiki:Community_Portal|'''How to get involved!''']]
 
|| [[PyMolWiki:Community_Portal|'''How to get involved!''']]
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|| [[About| '''About PyMOL''']]
 
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{| align="center" width="90%" style="background: #fafafa; border-right: 1px solid #333; border-left: 1px solid #333; border-bottom: 1px solid #333"
 
{| align="center" width="90%" style="background: #fafafa; border-right: 1px solid #333; border-left: 1px solid #333; border-bottom: 1px solid #333"
 
|+ style="text-align: left; font-weight:bold; font-size:150%; color:#333; background: #EFE6FF; padding:10px; border: 1px solid #333" | News and Updates ([[Older_News|archive]])
 
|+ style="text-align: left; font-weight:bold; font-size:150%; color:#333; background: #EFE6FF; padding:10px; border: 1px solid #333" | News and Updates ([[Older_News|archive]])
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! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | Wiki
 
! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | Wiki
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| style="padding: 3px 5px 10px 15px;"| ♦ Rather large changes to the style of the main page.  Hopefully this will transition into something more pleasing.
 
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| style="padding: 3px 5px 10px 15px;"| ♦ We need experienced PyMOL users to link pages to their respective categories and make new categories.  Some new categories that need to be filled: [[:Category:Settings]], [[:Category:Publication_Quality]], [[:Category:Image_Manipulation]], [[:Category:Nucleic_Acids]].  We also need a category -- or categories -- on biochemical analysis and other useful things we do in PyMOL.  This will help people expand their knowledge (by being able to see related issues), and make it easier for the power users to find what they need.  The editing is '''very simple''' -- all you do is add a category tag(s) at the end of the pages.
 
 
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| style="padding: 3px 5px 10px 15px;"| ♦  We also need folks to link to the pages in the [[Special:Lonelypages|Orphaned Pages]].  These pages are only found by direct searching, so we should change that to help make this more usable.
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| style="padding: 3px 5px 10px 15px;"| ♦ [http://www.google.com/analytics/ Google Analytics] cookies/tracking added to the wiki. We're just doing hit counts and watching what people do so we can improve the wiki.
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| style="padding: 3px 5px 10px 15px;"| ♦ [[CheatSheet|PyMOL Cheat Sheet]] (reference card) has been donated.  It's also posted in the table above for quick access.
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| style="padding: 3px 5px 10px 15px;"| ♦ '''[[Gsoc2008|Google Summer of Code 2008 for PyMOL]]''' has been created.  '''Update:''' PyMOL wasn't chosen, so this page is now about ideas for improving PyMOL.
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|-
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| style="padding: 3px 5px 10px 15px;"| ♦ Added a special category/section for active PyMOL [[:Category:Tutorials|Tutorials]].  These are pages not just with information, but easy to understand, step-by-step pages from which to learn.
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|valign="bottom" width="150px" style="padding: 0 20px 20px 0" |[[Image:refcard.png|155px]] Screenshot of the donated [[CheatSheet|PyMOL reference card]].
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! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | PyMOL
 
! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | PyMOL
 
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| style="padding: 3px 5px 10px 15px;"| ♦ PyMOL 1.0 has been released!
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| style="padding: 3px 5px 10px 15px;"| ♦ [[group]] command has been added.
 
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| style="padding: 3px 5px 10px 15px;"| ♦ [http://delsci.info/dsc/ PyMOL Official Documentation] is also available for subscribers.
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| style="padding: 3px 5px 10px 15px;"| ♦ The truly awesome [[grid_mode]] setting has been added.
 
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! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | Scripts & Plugins
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| style="padding: 3px 5px 10px 15px;"| ♦ [[Ellipsoids]] representation added for drawing thermal ellipsoids.
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|valign="bottom" width="150px" style="padding: 0 20px 20px 0" |[[Image:Gm1.png|125px]] Screenshot of [[grid_mode|Grid Mode]] in action.
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{|style="background-color: transparent;" width="100%"
 
{|style="background-color: transparent;" width="100%"
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! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | Scripts & Plugins
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| style="padding: 3px 5px 10px 15px;"| ♦ [[ImmersiveViz]] -- Headtracking user interface for PyMOL  (watch the video)!
 
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| style="padding: 3px 5px 10px 15px;"| ♦ [[Colorama]] --a PyMOL plugin which allows to color objects using adjustable scale bars
 
| style="padding: 3px 5px 10px 15px;"| ♦ [[Colorama]] --a PyMOL plugin which allows to color objects using adjustable scale bars
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| style="padding: 3px 5px 10px 15px;"| ♦ [[EZ-Viz]]
 
| style="padding: 3px 5px 10px 15px;"| ♦ [[EZ-Viz]]
 
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|valign="top" width="150px"|[[Image:COLORAMA-screenshot.jpg|150px]]
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|width="150px" style="padding: 0 20px 20px 0; text-align:left" |[[Image:COLORAMA-screenshot.jpg|125px]] Screenshot of [[Colorama]].
 
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Revision as of 13:14, 28 May 2008

Welcome to the PyMOL Wiki
We are the community-based support site for the popular molecular visualization program, PyMOL.


New Users
New users are encouraged to join. Feel free to add any appropriate content; make an account and get started!
Quick Links
Table of Contents Index of all pages PyMOL Cheat Sheet: PDF Wiki Page
Tutorials Commands Settings: All Documented
Script Library Plugins See All Categories
Frequently Asked Questions How to get involved! About PyMOL
News and Updates (archive)
Wiki
♦ Google Analytics cookies/tracking added to the wiki. We're just doing hit counts and watching what people do so we can improve the wiki.
♦ PyMOL Cheat Sheet (reference card) has been donated. It's also posted in the table above for quick access.
♦ Google Summer of Code 2008 for PyMOL has been created. Update: PyMOL wasn't chosen, so this page is now about ideas for improving PyMOL.
♦ Added a special category/section for active PyMOL Tutorials. These are pages not just with information, but easy to understand, step-by-step pages from which to learn.
Refcard.png Screenshot of the donated PyMOL reference card.
PyMOL
♦ group command has been added.
♦ The truly awesome grid_mode setting has been added.
♦ Ellipsoids representation added for drawing thermal ellipsoids.
Gm1.png Screenshot of Grid Mode in action.
Scripts & Plugins
♦ ImmersiveViz -- Headtracking user interface for PyMOL (watch the video)!
♦ Colorama --a PyMOL plugin which allows to color objects using adjustable scale bars
♦ ProMOL plugin added. Catalytic site prediction, other tools. Redirects to website.
♦ EMovie plugin added. Easy movies in PyMol using a GUI.
♦ DYNMAP plugin page created. Check it out!
♦ EZ-Viz
COLORAMA-screenshot.jpg Screenshot of Colorama.
Retrieved from "http://wiki.pymol.org/index.php?title=Main_Page&oldid=4649"