Hi I have a problem. For some reason PyMOl do not display certain areas (several loops) of my .pdb file (1DAN) when in cartoon. When I display the structure in "lines" or "sticks" everything is ok. Furthermore, other .pdb viewers dont have this problem. I have tried several things: 1. Upgraded to the newest version og PyMol. 2. Redefined secondary structure using the "alter command". 3. Imported the .pdb file into SwissViewer, saved as the imported structure as a .pdb file, and then imported into PyMOl.
None of these things have solved the problem. Help please! (I would hate to have to start using another pdb-viewer!!)