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Atom names
The names assigned to hydrogens take the form H01, H02, ..., and they seem to be assigned consistently to each amino acid. Is there a way to get h_add to use the standard PDB atom names instead? Or is this a deliberate attempt to break compatibility with other software packages, since the protonation states are assigned arbitrarily by h_add?
--Sbliven 18:25, 6 August 2013 (CDT)