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• Huge surfaces
  PyMOL can render '''very large''' (huge) surfaces of proteins, using a few tricks. First off, you should know that because o
  2 KB (273 words) - 18:09, 3 April 2018
• 2. Translucent Surfaces
  5 KB (903 words) - 17:25, 31 October 2015

Page text matches

• Surface quality
  ...pproximations. These low values are good for speed--especially for larger surfaces. For rendering of publication quality photos, and truer representations of ...(this does not include any ray-tracing or rendering). Lastly, ray tracing surfaces with high quality settings takes much longer.
  1 KB (182 words) - 03:27, 14 November 2016
• Map new
  This command can be used to create low-resolution surfaces of protein structures. See examples for [[huge surfaces]] and [[isomesh]].
  1 KB (165 words) - 02:16, 28 March 2014
• Transparency
  # show all surfaces with 50% transparency.
  2 KB (213 words) - 04:07, 28 March 2014
• Surface color
  '''surface_color''' controls the color of surfaces as drawn in PyMOL.
  610 bytes (80 words) - 02:39, 24 July 2017
• Spec direct power
  This controls the direct specular power. Essentially, this is how strongly surfaces that are perpendicular to the ray drawn from the camera are rendered. The
  711 bytes (100 words) - 01:44, 28 March 2014
• Two sided lighting
  ...ided_lighting''' when turned on illuminates both the inside and outside of surfaces; when off, just the outside. Notice the light on the inside of the surface
  488 bytes (74 words) - 04:07, 28 March 2014
• MSMS
  * [http://en.wikipedia.org/wiki/Molecular_surface Molecular Surfaces]
  1 KB (168 words) - 03:27, 13 November 2017
• Surface
  ...face "Connolly" surface] or the surface that would be traced out by the '''surfaces''' of waters in contact with the protein at all possible positions. [[Image To adjust the transparency of surfaces try:
  7 KB (1,009 words) - 03:27, 14 November 2016
• Caver
  [[Category:Surfaces and Voids|Caver]]
  1 KB (202 words) - 01:14, 28 August 2017
• Blender
  === 1. Translucent Surfaces === High quality translucent surfaces, better than PyMOL's internal renderer/ray-tracer.
  7 KB (1,153 words) - 18:52, 31 October 2015
• SuperSym
  ...printing, this option saves at least 60% of materials relative to regular surfaces, with minimal loss in resolution ***Displays symmetry partners as surfaces. This option may take a very long time to execute
  5 KB (689 words) - 16:19, 20 July 2020
• Huge surfaces
  PyMOL can render '''very large''' (huge) surfaces of proteins, using a few tricks. First off, you should know that because o
  2 KB (273 words) - 18:09, 3 April 2018
• OLD TOPTOC
  ## [[Surfaces_and_Voids|Surfaces and Voids]]
  4 KB (451 words) - 02:16, 28 March 2014
• MOLE 2.0: advanced approach for analysis of biomacromolecular channels
  [[Category:Surfaces and Voids|Mole]]
  3 KB (468 words) - 02:39, 24 July 2017
• TOPTOC
  ## [[Surfaces_and_Voids|Surfaces and Voids]]
  6 KB (682 words) - 21:17, 28 March 2014
• Displaying Biochemical Properties
  ...he protein atoms. The contact surface is the surface traced out by the vdw surfaces of the water atoms when in contact with the protein. PyMOL can show solvent accessible surfaces using the dot or sphere representations:
  14 KB (2,294 words) - 03:21, 16 September 2014
• Ramp New
  ''See also the [[huge surfaces]] example.''
  8 KB (1,198 words) - 17:32, 14 August 2015
• Gallery
  ...g a binding pocket|description=This image shows a nice way to show binding surfaces
  21 KB (3,151 words) - 06:13, 6 March 2017
• PLoS
  ...n the interface are labeled. The right panel illustrates the complementary surfaces of the interface by splitting the complex apart like a clamshell. The small
  41 KB (6,131 words) - 18:10, 31 October 2015

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