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• Normalize ccp4 maps
  [[Category:Maps]]
  1 KB (193 words) - 20:24, 9 July 2015
• Display CCP4 Maps
  The following steps can be used to read CCP4-format electron density maps into pymol for the generation of publication-quality images. If the ccp4 maps loaded by PyMOL seem smaller/larger than maps in other programs this might be due to normalization. To stop PyMOL from n
  3 KB (540 words) - 20:23, 9 July 2015

Page text matches

• Map Trim
  for example trim all your maps to 3 Angstroms around ligands with one [[Category:Maps]]
  826 bytes (126 words) - 02:16, 28 March 2014
• Map set
  ...] you can add two maps together or create a consensus map from a series of maps or even take a difference map. # add 3 maps
  2 KB (281 words) - 02:16, 28 March 2014
• SuperSymSource
  [[Category:Maps]]
  299 bytes (36 words) - 16:19, 20 July 2020
• Map Set Border
  [[Category:Maps]]
  295 bytes (44 words) - 02:16, 28 March 2014
• Display CCP4 Maps
  The following steps can be used to read CCP4-format electron density maps into pymol for the generation of publication-quality images. If the ccp4 maps loaded by PyMOL seem smaller/larger than maps in other programs this might be due to normalization. To stop PyMOL from n
  3 KB (540 words) - 20:23, 9 July 2015
• Isomesh
  ...to PyMOL from another tool, then it is definitely worth comparing how the maps are being represented by creating an equivalent figure in both, making sure [[Category:Maps]]
  4 KB (555 words) - 04:05, 7 December 2020
• Map double
  [[Category:Maps]]
  667 bytes (98 words) - 04:05, 7 December 2020
• Load brick
  [[Category:Maps]]
  886 bytes (95 words) - 04:22, 12 November 2018
• Normalize ccp4 maps
  [[Category:Maps]]
  1 KB (193 words) - 20:24, 9 July 2015
• MtsslWizard
  ...r coded distance map. It is also possible to calculate difference distance maps between two conformations of a protein. ===Distance maps===
  6 KB (926 words) - 05:13, 26 May 2020
• Bnitools
  [[File:bni_delphimap.jpg|150px|||Load and show DelPhi or other maps]] * value maps. (7 closed cavity to 1 open)
  8 KB (934 words) - 05:42, 31 May 2016
• Map new
  [[Category:Maps]]
  1 KB (165 words) - 02:16, 28 March 2014
• Contact map visualizer
  ...contact map images to the residues in PyMOL in a interactive way. Contact maps are pixel graphics where each protein residue corresponds to one line and o # This PyMOL Plugin Contact Maps Visualizer is
  4 KB (589 words) - 03:43, 6 December 2021
• Fetch
  ''New in PyMOL 1.7.2: Support type=emd to download maps from [http://www.emdatabank.org/ EMDataBank]'' ...n PyMOL 1.3: Support type=2fofc and type=fofc to download electron density maps''
  4 KB (590 words) - 03:58, 4 March 2019
• Isosurface
  [[Category:Maps]]
  2 KB (276 words) - 03:21, 22 June 2021
• Load
  ...acromodel files must end in ".mmod", XPLOR maps must end in ".xplor", CCP4 maps must end in ".ccp4", Raster3D input (Molscript output) must end in ".r3d",
  5 KB (824 words) - 04:03, 8 January 2018
• CMPyMOL
  * Supports displaying variance of contact points from a series of contact maps generated from multi-model PDB files. * CMPyMOL stores the calculated contact maps, heat maps and contact density information in a local SQLite database for fast and eas
  8 KB (1,116 words) - 05:42, 31 May 2016
• APBS
  [[Image:Apbs_ex.png|thumb|right|300px|PyMOL visualizing two maps at once]]
  3 KB (480 words) - 02:21, 20 August 2018
• Tiff2ccp4
  This script will convert tiff stacks to CCP4 maps for reading in PyMOL. CCP4 maps.
  16 KB (1,394 words) - 02:06, 22 August 2016
• MovieSchool 4
  # this code maps the zooming of
  4 KB (625 words) - 02:16, 28 March 2014

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