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Difference between revisions of "Stick radius"

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==Overview==
 
==Overview==
 +
This setting affects the radius of sticks in the sticks representation. Default scale is set to 0.25.
  
This setting affects the radius of sticks in the sticks representation. Default scale is set to 0.25.
+
In newer versions of PyMOL, one may set the [[Stick_radius]] on a per-bond basis.  So, you can set for example, the radius of only selected bonds if you want.  This is done through the [[Set_bond]] command.
 +
 
 +
<gallery>
 +
Image:Stick_rad_0.05.png|stick_radius set to 0.05
 +
Image:Stick_radius_default.png|stick_radius set to the default 0.25  
 +
Image:Stick_rad_0.85.png|stick_radius set to 0.85
 +
</gallery>
  
 
==Syntax==
 
==Syntax==
 +
<source lang="python">
 +
set_bond stick_radius, ''size'', selection
 +
</source>
 +
where,
 +
*''size'' can be any float number. Using 0.25 (default value) is usually appropriate for most representations, although 0.15 migh be preferred for comparing closely related structures, e.g., conformers.
 +
 +
''Note:'' <source lang="python">set_bond stick_radius</source> by itself will revert to 1.00.
 +
==If the above commands do not work==
 +
You can do something like below
 +
<source lang="python">
  
<code>set sticks_radiu, ''size'', selection</code>
+
To set on the entire object
  
''size'' can be any float number. Using 0.25 (default value) is usually appropriate for most representations, although 0.15 migh be preferred for comparing closely related structures, e.g., conformers.
+
set stick_radius=0.12
  
''Note:'' <code>set stick_radius</code> by itself will revert to 1.00.
+
OR
 +
 
 +
create myObj, <selection>
 +
 
 +
Ex : create myObj, hetatm
 +
 
 +
set stick_radius,0.2,myObj
 +
 
 +
 
 +
</source>
  
 
==Related settings==
 
==Related settings==
 
+
*[[Set_bond]]
 
*[[sphere_scale]]
 
*[[sphere_scale]]
 
*[[stick_ball_ratio]]
 
*[[stick_ball_ratio]]
 +
 +
[[Category:Sticks]]
 +
[[Category:Settings]]

Latest revision as of 03:36, 28 March 2014

Overview

This setting affects the radius of sticks in the sticks representation. Default scale is set to 0.25.

In newer versions of PyMOL, one may set the Stick_radius on a per-bond basis. So, you can set for example, the radius of only selected bonds if you want. This is done through the Set_bond command.

Syntax

set_bond stick_radius, ''size'', selection

where,

  • size can be any float number. Using 0.25 (default value) is usually appropriate for most representations, although 0.15 migh be preferred for comparing closely related structures, e.g., conformers.

Note:

set_bond stick_radius

by itself will revert to 1.00.

If the above commands do not work

You can do something like below

To set on the entire object

set stick_radius=0.12

OR

create myObj, <selection>

Ex : create myObj, hetatm

set stick_radius,0.2,myObj

Related settings