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  1. AngleBetweenHelices
  2. Angle between domains
  3. Annocryst
  4. Annotate v
  5. Annotation wizard
  6. Antialias
  7. Apbsplugin
  8. Apropos
  9. Assembly
  10. Async builds
  11. Atom name wildcard
  12. Attach
  13. AutoMultiFit
  14. Auto arg
  15. Auto show classified
  16. Auto zoom
  17. Autodock plugin
  18. Average b
  19. Axes
  20. Axpymol
  21. Azahar
  22. B2transparency
  23. Backface cull
  24. Backward
  25. Ball and Stick
  26. BbPlane
  27. Bg Color
  28. Bg gradient
  29. Bg rgb
  30. Bg rgb bottom
  31. Bg rgb top
  32. Biochemistry student intro
  33. BiologicalUnit
  34. BiologicalUnit/Quat
  35. Blender
  36. Bnitools
  37. Bond
  38. Bondpack
  39. Bounding Box
  40. Builder
  41. Button
  42. Button mode name
  43. CASTp
  44. CBC
  45. CCTBX
  46. CCTBX-fedora32
  47. CGOCylinder
  48. CGO Text
  49. CMPyMOL
  50. CMYK
  51. COLLADA
  52. Cache
  53. CalcArea
  54. Capture
  55. Cart to frac
  56. Cartoon
  57. Cartoon Helix Settings
  58. Cartoon all alt
  59. Cartoon color
  60. Cartoon cylindrical helices
  61. Cartoon discrete colors
  62. Cartoon dumbbell length
  63. Cartoon dumbbell radius
  64. Cartoon dumbbell width
  65. Cartoon fancy sheets
  66. Cartoon flat cycles
  67. Cartoon flat sheets
  68. Cartoon gap cutoff
  69. Cartoon helix radius
  70. Cartoon highlight color
  71. Cartoon nucleic acid color
  72. Cartoon nucleic acid mode
  73. Cartoon oval length
  74. Cartoon oval quality
  75. Cartoon oval width
  76. Cartoon putty radius
  77. Cartoon putty scale max
  78. Cartoon putty scale min
  79. Cartoon putty transform
  80. Cartoon rect length
  81. Cartoon rect width
  82. Cartoon ring mode
  83. Cartoon ring transparency
  84. Cartoon round helices
  85. Cartoon sampling
  86. Cartoon side chain helper
  87. Cartoon smooth loops
  88. Cartoon transparency
  89. Caver2
  90. Caver3
  91. Cavity cull
  92. Ccp4 contact
  93. Ccp4 ncont
  94. Ccp4 pisa
  95. Cd
  96. Cealign
  97. Cealign plugin
  98. Cell
  99. Center
  100. Center of mass

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