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  • Sync
    [[sync]] is an API-only function which waits until all current commands have been executed bef ==PYMOL API==
    326 bytes (46 words) - 01:44, 28 March 2014
  • Mclear
    ===PYMOL API===
    164 bytes (20 words) - 02:16, 28 March 2014
  • Get Version
    == PYMOL API ==
    196 bytes (27 words) - 02:16, 28 March 2014
  • Invert
    ===PYMOL API===
    299 bytes (39 words) - 02:16, 28 March 2014
  • Mmatrix
    ===PYMOL API===
    261 bytes (36 words) - 02:16, 28 March 2014
  • Id Atom
    ===PYMOL API===
    284 bytes (45 words) - 03:06, 28 March 2014
  • Set state order
    [[set_state_order]] is an API only function to set the order of states for an object. == PyMOL API ==
    521 bytes (71 words) - 22:50, 21 April 2015
  • Middle
    ===PYMOL API===
    161 bytes (21 words) - 02:16, 28 March 2014
  • Mstop
    ===PYMOL API===
    230 bytes (29 words) - 02:16, 28 March 2014
  • Deprotect
    ===PYMOL API===
    316 bytes (35 words) - 04:20, 4 February 2019
  • Get fastastr
    [[get_fastastr]] is an API-only function which returns the one-letter amino acid sequence in FASTA for == PyMOL API ==
    780 bytes (95 words) - 02:46, 3 April 2017
  • Indicate
    ===PYMOL API===
    467 bytes (65 words) - 03:06, 28 March 2014
  • Quit
    == Python API ==
    304 bytes (37 words) - 04:05, 7 December 2020
  • Mask
    ===PYMOL API===
    420 bytes (58 words) - 01:22, 19 October 2015
  • Get Pdbstr
    '''get_pdbstr''' is an API-only function which returns a pdb corresponding to the atoms in the selecti ===PYMOL API ONLY===
    655 bytes (97 words) - 02:16, 28 March 2014
  • Move
    ===PYMOL API===
    393 bytes (50 words) - 15:34, 11 July 2014
  • Load Model
    ===PYMOL API===
    483 bytes (73 words) - 02:16, 28 March 2014
  • Redo
    == PyMOL API ==
    354 bytes (47 words) - 03:21, 22 June 2021
  • Torsion
    ===PYMOL API===
    424 bytes (58 words) - 01:44, 28 March 2014
  • Wizard
    ===PYMOL API===
    557 bytes (75 words) - 04:07, 28 March 2014
  • Pdb Conect All
    === PyMOL API ===
    445 bytes (67 words) - 01:04, 19 October 2015
  • Load coords
    [[load_coords]] is an API only function to load selection coordinates. == PyMOL API ==
    814 bytes (101 words) - 22:50, 21 April 2015
  • Light count
    ==PyMol API==
    633 bytes (82 words) - 20:23, 9 July 2015
  • Suspend updates
    ===PYMOL API===
    668 bytes (98 words) - 23:57, 20 May 2014
  • Identify
    == PYMOL API ==
    429 bytes (61 words) - 01:04, 19 October 2015
  • Get names of type
    ===PYMOL API===
    640 bytes (94 words) - 18:49, 14 October 2019
  • Get Symmetry
    ===PYMOL API===
    558 bytes (75 words) - 03:05, 1 March 2021
  • Get Model
    ===PYMOL API===
    859 bytes (93 words) - 03:11, 1 April 2019
  • Get Distance
    ===PYMOL API===
    466 bytes (64 words) - 02:16, 28 March 2014
  • Get Angle
    ===PYMOL API===
    462 bytes (67 words) - 02:16, 28 March 2014
  • Virtual trackball
    ===PYMOL API===
    668 bytes (76 words) - 04:07, 28 March 2014
  • Disable
    ===PYMOL API===
    636 bytes (90 words) - 23:57, 20 May 2014
  • Set Symmetry
    ===PYMOL API=== # API
    698 bytes (95 words) - 03:11, 1 April 2019
  • Get object list
    '''cmd.get_object_list''' is an API only command which returns the list of all molecular objects in selection. == PyMOL API ==
    1 KB (176 words) - 02:46, 3 April 2017
  • Pdb use ter records
    == PyMOL API ==
    992 bytes (149 words) - 03:14, 7 January 2019
  • Get coords
    [[get_coords]] is an API only function that returns the coordinates of a selection as a numpy array. == PyMOL API ==
    952 bytes (140 words) - 07:02, 3 January 2016
  • Intra rms cur
    ===PYMOL API===
    721 bytes (106 words) - 03:06, 28 March 2014
  • Unset
    == Python API ==
    651 bytes (89 words) - 03:05, 1 March 2021
  • Get Dihedral
    ===PYMOL API===
    798 bytes (105 words) - 15:55, 30 October 2015
  • Centerofmass
    == Python API ==
    757 bytes (92 words) - 00:06, 17 October 2016
  • Order
    ===PYMOL API===
    679 bytes (98 words) - 02:16, 28 March 2014
  • View
    ===PYMOL API===
    723 bytes (109 words) - 15:34, 11 July 2014
  • Get coordset
    [[get_coordset]] is an API only function that returns the coordinates of one object-state (one "coordi == PyMOL API ==
    1 KB (166 words) - 02:46, 18 September 2017
  • Get View
    ===PYMOL API=== ===API USAGE===
    1 KB (225 words) - 02:13, 14 September 2020
  • Enable
    ===PYMOL API===
    886 bytes (130 words) - 23:57, 20 May 2014
  • Hide
    ===PYMOL API===
    1 KB (147 words) - 23:57, 20 May 2014
  • Set Color
    ===PYMOL API===
    1,016 bytes (138 words) - 18:49, 14 October 2019
  • Get
    =PYMOL API= *The API command will not print out and should be stored or used for comparison
    786 bytes (120 words) - 02:16, 28 March 2014
  • Undo
    == PyMOL API == <code>undo_enable</code> is an API-only feature that allows you enable undo.
    2 KB (272 words) - 03:21, 22 June 2021
  • Mem
    ...standard output. This is a debugging feature, not an official part of the API.
    147 bytes (23 words) - 02:16, 28 March 2014
  • Get Names
    ===PYMOL API===
    1 KB (169 words) - 03:47, 7 March 2016
  • Mdo
    ===PYMOL API===
    1 KB (168 words) - 02:16, 28 March 2014
  • Orient
    ===PYMOL API===
    1 KB (183 words) - 02:16, 28 March 2014
  • Get raw alignment
    '''get_raw_alignment''' is an API only function that returns a list of lists of (object,index) tuples contain == PYMOL API ==
    2 KB (255 words) - 03:14, 7 January 2019
  • Save
    ===PYMOL API===
    1 KB (230 words) - 00:07, 17 October 2016
  • Protect
    ==PYMOL API==
    1 KB (179 words) - 05:26, 8 February 2016
  • Intra fit
    ===PYMOL API===
    2 KB (222 words) - 04:31, 26 June 2017
  • Mpng
    == Python API ==
    2 KB (232 words) - 04:20, 4 February 2019
  • Set Key
    == PyMOL API ==
    2 KB (273 words) - 03:47, 7 March 2016
  • Set View
    ===PYMOL API===
    2 KB (226 words) - 05:13, 26 May 2020
  • Show
    ==PYMOL API==
    2 KB (288 words) - 23:57, 20 May 2014
  • H Fill
    =PYMOL API=
    425 bytes (61 words) - 03:06, 28 March 2014
  • Create
    ===PYMOL API===
    2 KB (266 words) - 03:23, 29 April 2019
  • Ball and Stick
    ====Command Line/API====
    2 KB (319 words) - 21:08, 9 July 2015
  • Extend
    This page is about an API function. For the selection operator with the same name, see [[extend (sele [[Extend]] is an API-only function which binds a user defined function as a command into the PyM
    4 KB (556 words) - 05:40, 25 July 2018
  • Png
    == PyMOL API ==
    2 KB (271 words) - 22:50, 21 April 2015
  • PluginArchitecture
    == API Entry Points == A plugin is a Python module which uses PyMOL's API. The following entrypoints add functionality to PyMOL:
    4 KB (547 words) - 03:24, 10 December 2018
  • Align
    * '''quiet''' = 0/1: suppress output {default: 0 in command mode, 1 in API} .... The RMSD can also be captured with a python script, see the [[#PyMOL API|API paragraph]] below. Note that the output prints "RMS" but it is in fact "RMS
    4 KB (558 words) - 04:50, 11 December 2017
  • Mset
    == PyMOL API ==
    2 KB (345 words) - 15:53, 30 October 2015
  • Transform selection
    === PYMOL API ===
    2 KB (349 words) - 20:24, 9 July 2015
  • Jump
    ===PyMOL API===
    3 KB (421 words) - 03:06, 28 March 2014
  • Set raw alignment
    [[set_raw_alignment]] is an API-only function to create an alignment object from lists of atom indices.
    691 bytes (94 words) - 03:14, 7 January 2019
  • Cif keepinmemory
    ...le is kept in memory and made accessible like a dictionary from the Python API.
    957 bytes (125 words) - 03:11, 1 April 2019
  • Alter
    === PYMOL API ===
    3 KB (413 words) - 07:02, 3 January 2016
  • Load brick
    [[load_brick]] is an API-only function to load an array of data as a [[map]] into PyMOL.
    886 bytes (95 words) - 04:22, 12 November 2018
  • Extend (selection operator)
    This page is about a selection operator. For the API function with the same name, see [[extend]].
    1 KB (161 words) - 17:32, 14 August 2015
  • Transform object
    [[transform_object]] in an API-only function which applies a transformation matrix to an object.
    971 bytes (123 words) - 02:46, 3 April 2017
  • Load
    ===PYMOL API=== *Load xyz.pdb using the PyMOL API:
    5 KB (824 words) - 04:03, 8 January 2018
  • Select
    * '''quiet''' = 0/1 {default: 0 for command, 1 for API}
    1 KB (146 words) - 05:40, 25 July 2018
  • Pytms
    ==PyMOL API functions== ! scope="col"| PyTMs API command
    9 KB (1,151 words) - 04:40, 14 December 2015
  • Space
    =PYMOL API=
    2 KB (239 words) - 01:44, 28 March 2014
  • Optimize
    === PyMOL API ===
    6 KB (815 words) - 03:23, 29 April 2019
  • Cealign
    * '''quiet''' = 0/1: suppress output {default: 0 in command mode, 1 in API}
    2 KB (218 words) - 15:32, 20 October 2014
  • Iterate State
    * space = dict: namespace dictionary (API only) {default: pymol namespace}
    2 KB (253 words) - 07:02, 3 January 2016
  • Scene
    == PyMOL API ==
    6 KB (867 words) - 06:32, 11 January 2016
  • Cartoon
    ===PYMOL API===
    7 KB (982 words) - 04:03, 8 January 2018
  • Iterate
    == PYMOL API ==
    7 KB (1,031 words) - 04:03, 8 January 2018
  • Jupyter
    * Directly using the PyMOL API
    3 KB (392 words) - 03:43, 6 December 2021
  • Ray
    ==PyMol API==
    8 KB (1,344 words) - 15:32, 20 October 2014
  • Get Coordinates I
    ...veral ways to extract or load atomic coordinates in PyMOL using the python API.
    3 KB (407 words) - 07:02, 3 January 2016
  • Distance
    =PYMOL API=
    3 KB (407 words) - 00:22, 4 April 2016
  • Annotate v
    ...It creates a Pymol object for each FR or CDR region. It utilizes the REST API interface of ''Abnum'' (http://www.bioinf.org.uk/abs/abnum/) from Dr Andrew
    3 KB (398 words) - 03:33, 1 March 2021
  • Leap Motion
    ...motion.com Leap Motion Controller] working in PyMOL, using the Leap Python API.
    3 KB (433 words) - 04:50, 11 December 2017
  • PDB plugin
    ...H domains and viewing geometric validation for PDB entries based on PDBe's API.
    4 KB (720 words) - 05:40, 25 July 2018
  • Fetch
    ...!quiet, which means 1 for the PyMOL command language, and 0 for the Python API}
    4 KB (590 words) - 03:58, 4 March 2019
  • Psico
    | api_info || || 1.7.2 (as [[api]])
    5 KB (689 words) - 03:58, 4 March 2019
  • InterfaceResidues
    ...change in area. To get that information use [[interfaceResidues]] in the api form as:
    6 KB (901 words) - 05:01, 16 November 2015
  • Ideas
    * Improve the Python API documentation. * Flesh out the new "from pymol2 import PyMOL" instance-based PyMOL API.
    17 KB (2,322 words) - 01:04, 19 October 2015
  • Launching PyMOL
    or, from Python (API):
    6 KB (991 words) - 02:16, 28 March 2014
  • Fetching scripts
    Locate token at: Account settings -> Account admin -> API Token
    6 KB (959 words) - 02:16, 28 March 2014
  • PLoS
    * "API" = '''A'''pplication '''P'''rogramming '''I'''nterface
    41 KB (6,131 words) - 18:10, 31 October 2015
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