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• Molecular Sculpting
  ...n "molecular sculpting" in PyMOL mailing list.[http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg00359.html ]: ...o the configuration the molecules possess when they were first loaded into PyMOL.
  2 KB (225 words) - 04:22, 12 November 2018
• Get View
  ===PYMOL API=== *3 = return formatted string instead of a list
  1 KB (225 words) - 02:13, 14 September 2020
• Load
  ...ust end in ".ccp4", Raster3D input (Molscript output) must end in ".r3d", PyMOL session files must end in ".pse", and pickled ChemPy models with a ".pkl" c ===PYMOL API===
  5 KB (824 words) - 04:03, 8 January 2018
• BiologicalUnit
  '''Note:''' PyMOL 1.8 can load biological units from mmCIF files with the '''[[assembly]]''' ...reate biological units for proteins. (This was created as a workaround of PyMOL's semi-functioning [[Symexp]] command.) It's also a fun script to play wit
  4 KB (500 words) - 02:19, 19 September 2016
• Iterate
  ...ymol''' module namespace, and thus exposes objects like '''cmd''' and '''[[pymol.stored|stored]]'''. The order of iteration is that of the internal atom ord ...modification of '''x, y, z''' (and atom-state level settings in Incentive PyMOL 1.7+).
  7 KB (1,031 words) - 04:03, 8 January 2018
• ObjectByArrows
  ...he left and right arrows on your keyboard to moving up and down the object list. Note that this script supports objects, but is untested for groups. from pymol import cmd
  2 KB (191 words) - 02:16, 28 March 2014
• Radius of gyration
  ...ourceforge.net/mailarchive/message.php?msg_id=27288491 pymol-users mailing list]! from pymol import cmd
  2 KB (277 words) - 02:27, 28 May 2019
• Advanced Coloring
  ...OL can be assigned a color using the small rightmost buttons in the object list (in the upper right part of the main GUI window. The [[Color]] command will PyMOL has a predefined set of colors that can be edited in the ''Settings->Colors
  6 KB (849 words) - 03:47, 7 March 2016
• Quickdisplays
  !colspan="3;"|List of functions | style="text-align:center;"| prints a list of functions
  5 KB (728 words) - 05:46, 18 January 2015
• Leap Motion
  ...to get the [https://www.leapmotion.com Leap Motion Controller] working in PyMOL, using the Leap Python API. ...yMOL 2.0 on all platforms, with MacPyMOL "syspython", and with Open-Source PyMOL on Gentoo Linux and MacOS.
  3 KB (433 words) - 04:50, 11 December 2017
• Single-word Selectors
  | All atoms currently loaded into PyMOL | All hydrogen atoms currently loaded into PyMOL
  3 KB (400 words) - 04:50, 11 December 2017
• Get Coordinates I
  There are several ways to extract or load atomic coordinates in PyMOL using the python API. ''New in PyMOL 1.7.4''. This is the fastest method to extract coordinates from a selection
  3 KB (407 words) - 07:02, 3 January 2016
• Split selection
  import pymol from pymol import cmd
  2 KB (320 words) - 01:44, 28 March 2014
• Transform odb
  from pymol import cmd import pymol
  2 KB (316 words) - 04:07, 28 March 2014
• Pml2py
  ...?msg_id=27331786 pymol-users mailing list] (Subject: Convert pml script to Pymol Python script, Fri, 8 Apr 2011). from pymol import cmd, parsing
  4 KB (467 words) - 04:30, 3 March 2020
• PluginArchitecture
  This page describes PyMOL's plugin architechture since version 1.5.0.6. ...ule which uses PyMOL's API. The following entrypoints add functionality to PyMOL:
  4 KB (547 words) - 03:24, 10 December 2018
• MtsslDock
  mtsslDock is a PyMOL plugin for distance constrained rigid-body docking. ...in labelling, trilateration and distance-constrained rigid body docking in PyMOL''', Gregor Hagelueken, Dinar Abdullin, Richard Ward and Olav Schiemann, DOI
  5 KB (840 words) - 05:13, 26 May 2020
• Load Traj
  Since version 1.0, PyMOL uses the [http://www.ks.uiuc.edu/Research/vmd/plugins/molfile/ Molfile Plug *PyMOL does not know how to wrap the truncated octahedron used by Amber You will n
  3 KB (369 words) - 03:14, 5 March 2018
• Polarpairs
  ...pairs with the [[find_pairs|cmd.find_pairs]] function and return them as a list of atom pairs. It finds (more or less) the same contacts like [[distance|cm from pymol import cmd
  2 KB (276 words) - 03:11, 1 April 2019
• Plugin manager
  28 bytes (3 words) - 15:24, 26 November 2014

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