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• Load coords
  == PyMOL API == * '''coords''' = list: Nx3 float array
  814 bytes (101 words) - 22:50, 21 April 2015
• Centerofmass
  ''New in PyMOL 1.7.2. See the [[center_of_mass]] script for older PyMOL versions.'' PyMOL> fetch 1ubq, async=0
  757 bytes (92 words) - 00:06, 17 October 2016
• ListSelection2
  * list multiple residues once * '''output''' controls if the list is hidden (default), printed on screen (S) or saved in a file (P)
  3 KB (399 words) - 23:33, 26 May 2014
• PyMOLWiki:About
  Reading the [[PyMol list]] for years, we users noticed a trend: person A would ask a question, perso ...created by Jason Vertrees for the purpose of founding a knowledgebase for PyMOL users. The site also espouses the open-source mode: to post any code on th
  986 bytes (164 words) - 00:49, 28 March 2014
• Transform selection
  ...ection. The matrix should actually be passed in as a single list -- not a list of lists. === PYMOL API ===
  2 KB (349 words) - 20:24, 9 July 2015
• Spectrum
  ''New in PyMOL 1.6: Supports any [[iterate]] expression, like [[spectrumany]]'' ''New in PyMOL 1.6: Supports space separated color list as palette, like [[spectrumany]]''
  4 KB (522 words) - 02:11, 24 November 2019
• Property Selectors
  ...el, and Tinker XYZ formats. Some of the data fields in these formats allow PyMOL to assign properties to atoms. You can group and select atoms according to ...entifiers are separated by plus signs (+) only. Do not add spaces within a list of identifiers. The selector '''resi''' takes (+)-separated lists of identi
  8 KB (1,154 words) - 04:50, 11 December 2017
• Pymol-script-repo
  The [[Pymol-script-repo]] is the preferred place to host scripts which are published on # A convenient way, to let PyMOL users download all scripts at the PyMOLWiki, with a minimum of effort.
  2 KB (217 words) - 03:24, 10 December 2018
• Git intro
  ...up of PyMOL users initiated together with Jason Vertrees, a project to let PyMOL scripts be We hope that script authors and PyMOL users would be interested in this option.
  2 KB (250 words) - 02:16, 28 March 2014
• Enable
  ...tations of an object. It is the equivalent of selecting the object in the list at the top of the [[Internal_gui|Internal GUI]]. ===PYMOL API===
  886 bytes (130 words) - 23:57, 20 May 2014
• Get object matrix
  ...'s initial position when loaded in. '''get_object_matrix''' will return a list of floats with that matrix for a named object. According the pymol source code, this is an "unsupported command".
  959 bytes (137 words) - 02:16, 28 March 2014
• Pdb conect nodup
  The '''pdb_conect_nodup''' setting in pymol controls if duplicated connectivity record ([http://www.wwpdb.org/documenta ...t may break PDB file loading in other applications which don't support it. PyMOL always wrote duplicated connect records (<tt>pdb_conect_nodup=0</tt>) and t
  1 KB (201 words) - 01:04, 19 October 2015
• Supercell
  ...99ab%40mail.gmail.com&forum_name=pymol-users thread on pymol-users mailing list]. run https://raw.githubusercontent.com/speleo3/pymol-psico/master/psico/xtal.py
  900 bytes (121 words) - 16:19, 20 July 2020
• Psico
  |download = https://github.com/speleo3/pymol-psico ...eloped as an in-house script collection, but grew to a quite comprehensive PyMOL extension. Some of the provided commands are already in the PyMOLWiki [[:Ca
  5 KB (689 words) - 03:58, 4 March 2019
• Fetch Host
  * mirror URL with "divided" layout ''(new in PyMOL 1.6)'' ''New in PyMOL 1.3''
  1 KB (204 words) - 04:50, 11 December 2017
• Aa codes
  ...code below and drop it into your .pymolrc file. Then, each time you load PyMOL, "one_letter" and "three_letter" will be defined. # kind of hash by just adding a matching list, and zipping.
  2 KB (380 words) - 02:46, 18 September 2017
• Get Names
  '''get_names''' returns a list of object and/or selection names. ===PYMOL API===
  1 KB (169 words) - 03:47, 7 March 2016
• Jump
  ...ut not necessarily in any order. This script allows the user to specify a list of frames and flipping through the set of frames is controlled by a user-de ===PyMOL API===
  3 KB (421 words) - 03:06, 28 March 2014
• Ccp4 pisa
  The script selects atoms from the list of the contacts found by PISA. ...our pdb file to find the interfaces. Then by using the ccp4_pisa script in PyMOL we separately select atoms for all interface types and individual interface
  1 KB (194 words) - 01:42, 28 March 2014
• Unset deep
  ''New in PyMOL 1.8.4'' * '''settings''' = str: space separated list of setting names or empty string for all settings {default: }
  719 bytes (95 words) - 00:07, 17 October 2016

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