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• Protect
  # create the fake trajectory (of states) for a in range(2,31): cmd.create("obj","obj",1,a)
  1 KB (179 words) - 05:26, 8 February 2016
• Get Color Indices
  will create a new color that will appear in the GUI list. From the [[Category:Commands|Get Color Indices]]
  2 KB (273 words) - 19:27, 29 May 2018
• Fuse
  ** mode=3: don't move and don't create a bond, just combine into single object [[Category:Commands|Fuse]]
  1 KB (190 words) - 03:47, 7 March 2016
• Fab
  * name = string: name of object to create or modify {default: obj??} [[Category:Commands]]
  2 KB (218 words) - 02:16, 28 March 2014
• Ramp New
  *'''name''' = string: name of the ramp object to create * create a new object from the atoms for which you just measured a property
  8 KB (1,198 words) - 17:32, 14 August 2015
• Fit
  * '''object''' = string: name of alignment object to create {default: None} [[Category:Commands|Fit]]
  2 KB (242 words) - 02:11, 24 November 2019
• Isomesh
  You can create mesh around the center of the view by specifying "center" as the selection When [[map_auto_expand_sym]] is ON, you can create mesh beyond the precalculated volume. In this
  4 KB (555 words) - 04:05, 7 December 2020
• Align
  ...aring proteins with lower sequence identity, the [[super]] and [[cealign]] commands perform better. * '''object''' = string: name of alignment object to create {default: (no alignment object)}
  4 KB (558 words) - 04:50, 11 December 2017
• Mset
  # this will create a one-to-one mapping of states to movie frames. useful for making movies fr [[Category:Commands|Mset]]
  2 KB (345 words) - 15:53, 30 October 2015
• Color
  ...ctor values and color by the new values. This example is possible because commands PyMOL does not recognize are passed to the Python interpreter --- a very p # create the global, stored array
  6 KB (1,020 words) - 02:11, 24 November 2019
• Flag
  If the [[auto_indicate_flags]] setting is true, then PyMOL will automatically create a selection called "indicate" which contains all atoms with that flag after [[Category:Commands]]
  3 KB (381 words) - 16:19, 20 July 2020
• Practical Pymol for Beginners
  ..., '''Edit''', '''Help''', '''Display''', etc), shortcut buttons for common commands, and the command line. .... But, it's complex, and page upon page of PyMOL documentation cover these commands, so we're going to ignore them as much as possible.
  12 KB (1,971 words) - 02:46, 3 April 2017
• MovieSchool 2
  ...ovie in PyMOL is a series of frames stitched together in some way so as to create the desired animation. Once a movie is made in PyMOL, we have a few option == Movie Making Commands ==
  11 KB (1,845 words) - 02:16, 28 March 2014
• Alter
  subsequent "create" and "byres" operations. [[Category:Commands|Alter]]
  3 KB (413 words) - 07:02, 3 January 2016
• PyMOLWiki:Community Portal
  First, [[Special:Userlogin|Create a New Account or Login]]. We have to block anonymous users from editing pa ...ing]] needs nice example usage. Feel free to expound (and comment on) the commands.
  6 KB (928 words) - 00:49, 28 March 2014
• Scene
  # 1) Load or create content for three scenes (this could just as easily ...red frames may not be up to date. I suggest calling "refresh" between the commands.
  6 KB (867 words) - 06:32, 11 January 2016
• Advanced Coloring
  The util.cba* ("Color By Atom") commands color atoms according to type: oxygen in red, nitrogen in blue, hydrogen in ...nc command will color all the atoms according to type, as in the util.cba* commands stated above, except for the C-atoms.
  6 KB (849 words) - 03:47, 7 March 2016
• Gallery
  # create phosphate spheres create phos, elem p;
  21 KB (3,151 words) - 06:13, 6 March 2017
• Biochemistry student intro
  Each of these two windows contain a command line, where we can enter commands into the program. <br> ...an, however, get really far without ever having to worry about writing any commands.
  17 KB (2,610 words) - 19:16, 20 May 2014
• Older News
  * [[psico]] is a python module which extends PyMOL with many commands * Create objects for each molecule or chain in selection with [[split_object]] and [
  13 KB (1,965 words) - 03:24, 10 December 2018

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