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• Category:Movies Module
  This is a list of all commands in the Movies Module for PyMol's interface.
  0 members (0 subcategories, 0 files) - 01:29, 28 March 2014
• Category:Settings Module
  This is a list of all commands in the Settings Module for PyMol's interface.
  0 members (0 subcategories, 0 files) - 01:29, 28 March 2014
• Category:Scripts Module
  This is a list of all commands in the Scripts Module for PyMol's interface.
  0 members (0 subcategories, 0 files) - 01:29, 28 March 2014
• Category:Input Output Module
  This is a list of all commands in the Input/Output Module for PyMol's interface.
  5 members (0 subcategories, 0 files) - 01:29, 28 March 2014
• Category:Ray Tracing Module
  This is a list of all commands in the Ray Tracing Module for PyMol's interface.
  0 members (0 subcategories, 0 files) - 01:29, 28 March 2014
• Ls
  ...tool if you have many directories full of files --- you don't have to quit PyMOL, you can just '''cd''' to the directory and '''ls''' to find the contents. # list all files in the current directory
  644 bytes (101 words) - 02:16, 28 March 2014
• Category:ObjSel Scripts
  ::Find connected clouds of objects in PyMOL :: Retrieves atom coordinates as Python array (list object).
  37 members (0 subcategories, 0 files) - 01:29, 28 March 2014
• PyMOL mailing list
  ...and share news related to PyMOL. And is also a place to interact with the PyMOL community, a community that spans the whole world. ...igh that your questions has already been asked and answered in the mailing list, hence always is a good idea to check that before asking a question. If you
  798 bytes (131 words) - 01:04, 19 October 2015
• List Secondary Structures
  import pymol pymol.stored_ss = []
  249 bytes (35 words) - 02:16, 28 March 2014
• Set Color
  ...een 0 an 255 can be used as well. (If at least one value is larger than 1, pymol will interpret all 3 values as between 0 and 255). If an existing color nam ===PYMOL API===
  1,016 bytes (138 words) - 18:49, 14 October 2019
• Category:Pymol-script-repo
  A list of available scripts and plugins available through the Pymol-script-repo git repository.
  80 members (0 subcategories, 0 files) - 01:29, 28 March 2014
• Category:Commands
  This is a list of all commands for PyMol's interface and cmd module. ...ation, please read [[:Talk:Main_Page#Organizing_PyMol_Commands| Organizing PyMol Commands]].
  225 members (20 subcategories, 0 files) - 01:29, 28 March 2014
• Id Atom
  ===PYMOL API=== list = cmd.id_atom(string selection)
  284 bytes (45 words) - 03:06, 28 March 2014
• Get Color Indices
  ...trieve the Pymol color names and corresponding internal color indices. The Pymol names can be used to designate color for objects, see [[Color]]. To retrie ...to convert that to RGB color values if you need to use the colors outside Pymol.
  2 KB (273 words) - 19:27, 29 May 2018
• List Colors
  # This is how to do it from the PyMOL command line or .pml script: import pymol
  384 bytes (59 words) - 02:16, 28 March 2014
• TransformSelectionByCameraView
  This little script was posted to the PyMol list. It will orient the molucule like cmd.orient() does, but does so by the ca https://sourceforge.net/p/pymol/mailman/message/10097639/
  862 bytes (127 words) - 04:40, 14 December 2015
• Iterate State
  ...he current atom. One common usage is to extract the positions as a python list to alter then write back to the molecule using alter_state. * space = dict: namespace dictionary (API only) {default: pymol namespace}
  2 KB (253 words) - 07:02, 3 January 2016
• Get names of type
  '''get_names_of_type''' returns a list of object and/or selection names. ===PYMOL API===
  640 bytes (94 words) - 18:49, 14 October 2019
• Intra fit
  ===PYMOL API=== Warren provided a great example on the PyMOL list. If the NMR ensemble has all the structures loaded as multiple states (whi
  2 KB (222 words) - 04:31, 26 June 2017
• User talk:Shiven
  Why not clean up the [[colorByRMSD]] page and then let folks on the PyMOL list know about it. It could be helpful to someone.
  349 bytes (63 words) - 04:13, 28 March 2014

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