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• Category:UI Scripts
  * [[apropos]] -- List all commands matching a given keyword or whose docs contain the keyword. - ''by EHP'' * [[Stereo_Ray]] -- This script will create two resolution specific ray traced images rotated appropriately for inclusi
  29 members (0 subcategories, 0 files) - 01:29, 28 March 2014
• Distance
  ::string: name of the distance object to create * This neat example shows how to create distance measurements from an atom in a molecule to all other atoms in the
  3 KB (407 words) - 00:22, 4 April 2016
• Select
  Convenience shortcut to create selection with name "sele": [[Category:Commands|Select]]
  1 KB (146 words) - 05:40, 25 July 2018
• Morph
  ...rmations, either as two objects or one multi-state object, '''morph''' can create an interpolated trajectory from the first to the second conformation. * name = string: name of object to create
  4 KB (614 words) - 03:24, 10 December 2018
• Launching PyMOL
  =Invoking PyMOL and reading startup commands from a file= ...eate ".pymolrc.py" which contains actual Python code instead of just PyMOL commands. See an [[Inchoates_pymolrc|example .pymolrc]]).
  6 KB (991 words) - 02:16, 28 March 2014
• Protect
  # create the fake trajectory (of states) for a in range(2,31): cmd.create("obj","obj",1,a)
  1 KB (179 words) - 05:26, 8 February 2016
• Get Color Indices
  will create a new color that will appear in the GUI list. From the [[Category:Commands|Get Color Indices]]
  2 KB (273 words) - 19:27, 29 May 2018
• Fuse
  ** mode=3: don't move and don't create a bond, just combine into single object [[Category:Commands|Fuse]]
  1 KB (190 words) - 03:47, 7 March 2016
• Fab
  * name = string: name of object to create or modify {default: obj??} [[Category:Commands]]
  2 KB (218 words) - 02:16, 28 March 2014
• Ramp New
  *'''name''' = string: name of the ramp object to create * create a new object from the atoms for which you just measured a property
  8 KB (1,198 words) - 17:32, 14 August 2015
• Fit
  * '''object''' = string: name of alignment object to create {default: None} [[Category:Commands|Fit]]
  2 KB (242 words) - 02:11, 24 November 2019
• Isomesh
  You can create mesh around the center of the view by specifying "center" as the selection When [[map_auto_expand_sym]] is ON, you can create mesh beyond the precalculated volume. In this
  4 KB (555 words) - 04:05, 7 December 2020
• Align
  ...aring proteins with lower sequence identity, the [[super]] and [[cealign]] commands perform better. * '''object''' = string: name of alignment object to create {default: (no alignment object)}
  4 KB (558 words) - 04:50, 11 December 2017
• Mset
  # this will create a one-to-one mapping of states to movie frames. useful for making movies fr [[Category:Commands|Mset]]
  2 KB (345 words) - 15:53, 30 October 2015
• Help:Contents
  Please read the following to learn how to edit existing pages and create new pages: Nearly all of the PyMOL commands and API are documented on this site. Feel free to look around. PyMOL has
  3 KB (471 words) - 00:53, 28 March 2014
• Color
  ...ctor values and color by the new values. This example is possible because commands PyMOL does not recognize are passed to the Python interpreter --- a very p # create the global, stored array
  6 KB (1,020 words) - 02:11, 24 November 2019
• Flag
  If the [[auto_indicate_flags]] setting is true, then PyMOL will automatically create a selection called "indicate" which contains all atoms with that flag after [[Category:Commands]]
  3 KB (381 words) - 16:19, 20 July 2020
• Practical Pymol for Beginners
  ..., '''Edit''', '''Help''', '''Display''', etc), shortcut buttons for common commands, and the command line. .... But, it's complex, and page upon page of PyMOL documentation cover these commands, so we're going to ignore them as much as possible.
  12 KB (1,971 words) - 02:46, 3 April 2017
• MovieSchool 2
  ...ovie in PyMOL is a series of frames stitched together in some way so as to create the desired animation. Once a movie is made in PyMOL, we have a few option == Movie Making Commands ==
  11 KB (1,845 words) - 02:16, 28 March 2014
• Alter
  subsequent "create" and "byres" operations. [[Category:Commands|Alter]]
  3 KB (413 words) - 07:02, 3 January 2016

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