This is a read-only mirror of pymolwiki.org
Search results
Jump to navigation
Jump to search
- [[sync]] is an API-only function which waits until all current commands have been executed bef ==PYMOL API==326 bytes (46 words) - 01:44, 28 March 2014
- ===PYMOL API===164 bytes (20 words) - 02:16, 28 March 2014
- == PYMOL API ==196 bytes (27 words) - 02:16, 28 March 2014
- ===PYMOL API===299 bytes (39 words) - 02:16, 28 March 2014
- ===PYMOL API===261 bytes (36 words) - 02:16, 28 March 2014
- ===PYMOL API===284 bytes (45 words) - 03:06, 28 March 2014
- [[set_state_order]] is an API only function to set the order of states for an object. == PyMOL API ==521 bytes (71 words) - 22:50, 21 April 2015
- ===PYMOL API===161 bytes (21 words) - 02:16, 28 March 2014
- ===PYMOL API===230 bytes (29 words) - 02:16, 28 March 2014
- ===PYMOL API===316 bytes (35 words) - 04:20, 4 February 2019
- [[get_fastastr]] is an API-only function which returns the one-letter amino acid sequence in FASTA for == PyMOL API ==780 bytes (95 words) - 02:46, 3 April 2017
- ===PYMOL API===467 bytes (65 words) - 03:06, 28 March 2014
- == Python API ==304 bytes (37 words) - 04:05, 7 December 2020
- ===PYMOL API===420 bytes (58 words) - 01:22, 19 October 2015
- '''get_pdbstr''' is an API-only function which returns a pdb corresponding to the atoms in the selecti ===PYMOL API ONLY===655 bytes (97 words) - 02:16, 28 March 2014
- ===PYMOL API===393 bytes (50 words) - 15:34, 11 July 2014
- ===PYMOL API===483 bytes (73 words) - 02:16, 28 March 2014
- == PyMOL API ==354 bytes (47 words) - 03:21, 22 June 2021
- ===PYMOL API===424 bytes (58 words) - 01:44, 28 March 2014
- ===PYMOL API===557 bytes (75 words) - 04:07, 28 March 2014
- === PyMOL API ===445 bytes (67 words) - 01:04, 19 October 2015
- [[load_coords]] is an API only function to load selection coordinates. == PyMOL API ==814 bytes (101 words) - 22:50, 21 April 2015
- ==PyMol API==633 bytes (82 words) - 20:23, 9 July 2015
- ===PYMOL API===668 bytes (98 words) - 23:57, 20 May 2014
- == PYMOL API ==429 bytes (61 words) - 01:04, 19 October 2015
- ===PYMOL API===640 bytes (94 words) - 18:49, 14 October 2019
- ===PYMOL API===859 bytes (93 words) - 03:11, 1 April 2019
- ===PYMOL API===558 bytes (75 words) - 03:05, 1 March 2021
- ===PYMOL API===466 bytes (64 words) - 02:16, 28 March 2014
- ===PYMOL API===462 bytes (67 words) - 02:16, 28 March 2014
- ===PYMOL API===668 bytes (76 words) - 04:07, 28 March 2014
- ===PYMOL API===636 bytes (90 words) - 23:57, 20 May 2014
- ===PYMOL API=== # API698 bytes (95 words) - 03:11, 1 April 2019
- '''cmd.get_object_list''' is an API only command which returns the list of all molecular objects in selection. == PyMOL API ==1 KB (176 words) - 02:46, 3 April 2017
- == PyMOL API ==992 bytes (149 words) - 03:14, 7 January 2019
- [[get_coords]] is an API only function that returns the coordinates of a selection as a numpy array. == PyMOL API ==952 bytes (140 words) - 07:02, 3 January 2016
- ===PYMOL API===721 bytes (106 words) - 03:06, 28 March 2014
- == Python API ==651 bytes (89 words) - 03:05, 1 March 2021
- ===PYMOL API===798 bytes (105 words) - 15:55, 30 October 2015
- == Python API ==757 bytes (92 words) - 00:06, 17 October 2016
- ===PYMOL API===679 bytes (98 words) - 02:16, 28 March 2014
- ===PYMOL API===723 bytes (109 words) - 15:34, 11 July 2014
- [[get_coordset]] is an API only function that returns the coordinates of one object-state (one "coordi == PyMOL API ==1 KB (166 words) - 02:46, 18 September 2017
- ===PYMOL API=== ===API USAGE===1 KB (225 words) - 02:13, 14 September 2020
- ===PYMOL API===886 bytes (130 words) - 23:57, 20 May 2014
- ===PYMOL API===1 KB (147 words) - 23:57, 20 May 2014
- ===PYMOL API===1,016 bytes (138 words) - 18:49, 14 October 2019
- =PYMOL API= *The API command will not print out and should be stored or used for comparison786 bytes (120 words) - 02:16, 28 March 2014
- == PyMOL API == <code>undo_enable</code> is an API-only feature that allows you enable undo.2 KB (272 words) - 03:21, 22 June 2021
- ...standard output. This is a debugging feature, not an official part of the API.147 bytes (23 words) - 02:16, 28 March 2014
- ===PYMOL API===1 KB (169 words) - 03:47, 7 March 2016
- ===PYMOL API===1 KB (168 words) - 02:16, 28 March 2014
- ===PYMOL API===1 KB (183 words) - 02:16, 28 March 2014
- '''get_raw_alignment''' is an API only function that returns a list of lists of (object,index) tuples contain == PYMOL API ==2 KB (255 words) - 03:14, 7 January 2019
- ===PYMOL API===1 KB (230 words) - 00:07, 17 October 2016
- ==PYMOL API==1 KB (179 words) - 05:26, 8 February 2016
- ===PYMOL API===2 KB (222 words) - 04:31, 26 June 2017
- == Python API ==2 KB (232 words) - 04:20, 4 February 2019
- == PyMOL API ==2 KB (273 words) - 03:47, 7 March 2016
- ===PYMOL API===2 KB (226 words) - 05:13, 26 May 2020
- ==PYMOL API==2 KB (288 words) - 23:57, 20 May 2014
- =PYMOL API=425 bytes (61 words) - 03:06, 28 March 2014
- ===PYMOL API===2 KB (266 words) - 03:23, 29 April 2019
- ====Command Line/API====2 KB (319 words) - 21:08, 9 July 2015
- This page is about an API function. For the selection operator with the same name, see [[extend (sele [[Extend]] is an API-only function which binds a user defined function as a command into the PyM4 KB (556 words) - 05:40, 25 July 2018
- == PyMOL API ==2 KB (271 words) - 22:50, 21 April 2015
- == API Entry Points == A plugin is a Python module which uses PyMOL's API. The following entrypoints add functionality to PyMOL:4 KB (547 words) - 03:24, 10 December 2018
- * '''quiet''' = 0/1: suppress output {default: 0 in command mode, 1 in API} .... The RMSD can also be captured with a python script, see the [[#PyMOL API|API paragraph]] below. Note that the output prints "RMS" but it is in fact "RMS4 KB (558 words) - 04:50, 11 December 2017
- == PyMOL API ==2 KB (345 words) - 15:53, 30 October 2015
- === PYMOL API ===2 KB (349 words) - 20:24, 9 July 2015
- ===PyMOL API===3 KB (421 words) - 03:06, 28 March 2014
- [[set_raw_alignment]] is an API-only function to create an alignment object from lists of atom indices.691 bytes (94 words) - 03:14, 7 January 2019
- ...le is kept in memory and made accessible like a dictionary from the Python API.957 bytes (125 words) - 03:11, 1 April 2019
- === PYMOL API ===3 KB (413 words) - 07:02, 3 January 2016
- [[load_brick]] is an API-only function to load an array of data as a [[map]] into PyMOL.886 bytes (95 words) - 04:22, 12 November 2018
- This page is about a selection operator. For the API function with the same name, see [[extend]].1 KB (161 words) - 17:32, 14 August 2015
- [[transform_object]] in an API-only function which applies a transformation matrix to an object.971 bytes (123 words) - 02:46, 3 April 2017
- ===PYMOL API=== *Load xyz.pdb using the PyMOL API:5 KB (824 words) - 04:03, 8 January 2018
- * '''quiet''' = 0/1 {default: 0 for command, 1 for API}1 KB (146 words) - 05:40, 25 July 2018
- ==PyMOL API functions== ! scope="col"| PyTMs API command9 KB (1,151 words) - 04:40, 14 December 2015
- =PYMOL API=2 KB (239 words) - 01:44, 28 March 2014
- === PyMOL API ===6 KB (815 words) - 03:23, 29 April 2019
- * '''quiet''' = 0/1: suppress output {default: 0 in command mode, 1 in API}2 KB (218 words) - 15:32, 20 October 2014
- * space = dict: namespace dictionary (API only) {default: pymol namespace}2 KB (253 words) - 07:02, 3 January 2016
- == PyMOL API ==6 KB (867 words) - 06:32, 11 January 2016
- ===PYMOL API===7 KB (982 words) - 04:03, 8 January 2018
- == PYMOL API ==7 KB (1,031 words) - 04:03, 8 January 2018
- * Directly using the PyMOL API3 KB (392 words) - 03:43, 6 December 2021
- ==PyMol API==8 KB (1,344 words) - 15:32, 20 October 2014
- ...veral ways to extract or load atomic coordinates in PyMOL using the python API.3 KB (407 words) - 07:02, 3 January 2016
- =PYMOL API=3 KB (407 words) - 00:22, 4 April 2016
- ...It creates a Pymol object for each FR or CDR region. It utilizes the REST API interface of ''Abnum'' (http://www.bioinf.org.uk/abs/abnum/) from Dr Andrew3 KB (398 words) - 03:33, 1 March 2021
- ...motion.com Leap Motion Controller] working in PyMOL, using the Leap Python API.3 KB (433 words) - 04:50, 11 December 2017
- ...H domains and viewing geometric validation for PDB entries based on PDBe's API.4 KB (720 words) - 05:40, 25 July 2018
- ...!quiet, which means 1 for the PyMOL command language, and 0 for the Python API}4 KB (590 words) - 03:58, 4 March 2019
- | api_info || || 1.7.2 (as [[api]])5 KB (689 words) - 03:58, 4 March 2019
- ...change in area. To get that information use [[interfaceResidues]] in the api form as:6 KB (901 words) - 05:01, 16 November 2015
- * Improve the Python API documentation. * Flesh out the new "from pymol2 import PyMOL" instance-based PyMOL API.17 KB (2,322 words) - 01:04, 19 October 2015
- or, from Python (API):6 KB (991 words) - 02:16, 28 March 2014
- Locate token at: Account settings -> Account admin -> API Token6 KB (959 words) - 02:16, 28 March 2014