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Difference between revisions of "Show hydrophobics"

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(PyMOL script to display hydrophobic sidechains)
 
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<source lang="python">
 +
#
 +
#
 
#
 
#
 
# Show side chain sticks for hydrophobic residues
 
# Show side chain sticks for hydrophobic residues
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color orange,hydrophobes
 
color orange,hydrophobes
 
disable hydrophobes
 
disable hydrophobes
set cartoon_smooth_loops,0
+
set cartoon_smooth_loops,0</source>

Revision as of 00:14, 8 March 2005

#
#
#
# Show side chain sticks for hydrophobic residues
#
# (script for PyMol)
# Tom Stout, 08/05/2004
#

mstop
dss
hide all
#zoom all
#orient
show cartoon,all
color gray,all

select hydrophobes,(resn ala+gly+val+ile+leu+phe+met)
show sticks, (hydrophobes and (!name c+n+o))
color orange,hydrophobes
disable hydrophobes
set cartoon_smooth_loops,0