This is a read-only mirror of pymolwiki.org

Difference between revisions of "Seq view"

From PyMOL Wiki
Jump to navigation Jump to search
m
 
m (12 revisions)
 
(11 intermediate revisions by one other user not shown)
Line 1: Line 1:
 
==Overview==
 
==Overview==
 +
The '''seq_view''' command turns the sequence viewer on and off. The sequence viewer is a very handy tool, you can use it for example to select residues very easily.  When the sequence viewer is turned on, you can select individual residues or multiple residues by selecting residues, using the mouse, on the sequence viewer.
  
seq_view turns the sequence viewer on and off. The sequence viewer is a very handy tool, you can use it for example to select residues very easily.
+
''Note:'' The sequence viewer, seems to decrease PyMOL's [[:Category:Performance|performance]] when very many proteins are loaded into PyMOL.  Therefore, if you have many proteins loaded, turn off the sequence viewer to increase performance if you don't need the viewer.  You can remedy this, by turning on [[texture_fonts]]. Simply do,
 +
<source lang="python">
 +
set texture_fonts, 1
 +
</source>
  
 
==Syntax==
 
==Syntax==
 +
<source lang="python">
 +
# to turn the sequence viewer on.
 +
set seq_view, 1
  
set seq_view, 1  to turn the sequence viewer on.
+
# to turn the sequence viewer off.
 +
set seq_view, 0
 +
</source>
  
set seq_view, 0  to turn the sequence viewer off.
+
==Related settings==
 +
*[[seq_view_color]]
 +
*[[seq_view_discrete_by_state]]
 +
*[[seq_view_fill_char]]
 +
*[[seq_view_fill_color]]
 +
*[[seq_view_format]]
 +
*[[seq_view_label_color]]
 +
*[[seq_view_label_mode]]
 +
*[[seq_view_label_spacing]]
 +
*[[seq_view_label_start]]
 +
*[[seq_view_location]]
 +
*[[seq_view_overlay]]
 +
*[[seq_view_unaligned_color]]
 +
*[[seq_view_unaligned_mode]]
  
 
+
[[Category:Settings|Seq view]]
==Related settings==
+
[[Category:Performance|performance]]
 +
[[Category:Seqeuence_Viewer]]

Latest revision as of 03:49, 28 March 2014

Overview

The seq_view command turns the sequence viewer on and off. The sequence viewer is a very handy tool, you can use it for example to select residues very easily. When the sequence viewer is turned on, you can select individual residues or multiple residues by selecting residues, using the mouse, on the sequence viewer.

Note: The sequence viewer, seems to decrease PyMOL's performance when very many proteins are loaded into PyMOL. Therefore, if you have many proteins loaded, turn off the sequence viewer to increase performance if you don't need the viewer. You can remedy this, by turning on texture_fonts. Simply do,

set texture_fonts, 1

Syntax

# to turn the sequence viewer on.
set seq_view, 1

# to turn the sequence viewer off.
set seq_view, 0

Related settings