This is a read-only mirror of pymolwiki.org

Difference between revisions of "Save sep"

From PyMOL Wiki
Jump to navigation Jump to search
m (10 revisions)
 
(6 intermediate revisions by 2 users not shown)
Line 16: Line 16:
 
   e.g. save_sep prefix
 
   e.g. save_sep prefix
 
   """
 
   """
   obj_list = cmd.get_names('models')
+
   obj_list = cmd.get_names("all")
  
 
   if obj_list:
 
   if obj_list:
 
     for i in range(len(obj_list)):
 
     for i in range(len(obj_list)):
#      if ( obj == '' ):
 
 
       obj_name = "%s%s.pdb" % (prefix, obj_list[i])
 
       obj_name = "%s%s.pdb" % (prefix, obj_list[i])
 
       cmd.save(obj_name, obj_list[i])
 
       cmd.save(obj_name, obj_list[i])
Line 30: Line 29:
  
 
</source>
 
</source>
 +
 +
[[Category:Script Library]]
 +
[[Category:States]]
 +
[[Category:Saving]]
 +
[[Category:ObjSel_Scripts]]

Latest revision as of 03:49, 28 March 2014

Description

Saves all objects as separate PDB files. Useful if you want to do things like combine separate *.pse files.

Code

from pymol import cmd
import glob
import re

def save_sep(prefix=''):
  """
  save_sep <prefix>

  saves multiple objects into multiple files using an optional prefix name.

  e.g. save_sep prefix
  """
  obj_list = cmd.get_names("all")

  if obj_list:
    for i in range(len(obj_list)):
      obj_name = "%s%s.pdb" % (prefix, obj_list[i])
      cmd.save(obj_name, obj_list[i])
      print "Saving %s" %  obj_name
  else:
    print "No objects found"
    
cmd.extend('save_sep',save_sep)