This is a read-only mirror of pymolwiki.org

Difference between revisions of "PyMOLWiki:Community Portal"

From PyMOL Wiki
Jump to navigation Jump to search
(No difference)

Revision as of 20:02, 15 February 2006

How to Get Involved

  • First, go request and account (see Main_Page).

What to Do

  • Next, we need folks to clean up the commands.
  • If you have a nifty script, feel free to upload it and add an index to your entry on the main page.
  • We need examples included with the commands.

Features

New! GeShi: Syntax Highlighting for Python & More

Use Geshi for syntax highlighting your Python code! Update: I have added the option for numbered syntax highlighting and non-numbered.

<source lang="python">Non line-numbered code here</source>
<npython>line-numbered code here</npython>

Now with line numbers (or not)!

<npython>

  1. axes.py

from pymol.cgo import * from pymol import cmd from pymol.vfont import plain

  1. create the axes object, draw axes with cylinders coloured red, green,
  2. blue for X, Y and Z

obj = [

  CYLINDER, 0., 0., 0., 50., 0., 0., 0.2, 1.0, 1.0, 1.0, 1.0, 0.0, 0.,
  CYLINDER, 0., 0., 0., 0., 50., 0., 0.2, 1.0, 1.0, 1.0, 0., 1.0, 0.,
  CYLINDER, 0., 0., 0., 0., 0., 50., 0.2, 1.0, 1.0, 1.0, 0., 0.0, 1.0,
  ]
  1. add labels to axes object (requires pymol version 0.8 or greater, I
  2. believe

cyl_text(obj,plain,[-5.,-5.,-1],'Origin',0.20,axes=[[3,0,0],[0,3,0],[0,0,3]]) cyl_text(obj,plain,[50.,0.,0.],'X',0.20,axes=[[3,0,0],[0,3,0],[0,0,3]]) cyl_text(obj,plain,[0.,50.,0.],'Y',0.20,axes=[[3,0,0],[0,3,0],[0,0,3]]) cyl_text(obj,plain,[0.,0.,50.],'Z',0.20,axes=[[3,0,0],[0,3,0],[0,0,3]])

  1. then we load it into PyMOL

cmd.load_cgo(obj,'axes') </npython>


See The Geshi Home Page