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Difference between revisions of "Msms"

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|type      = plugin
 
|type      = plugin
 
|filename  = plugins/msms.py
 
|filename  = plugins/msms.py
|author    = [[User:Hongbo_zhu|Hongbo Zhu Cn]]
+
|author    = [[User:Hongbo_zhu|Hongbo Zhu]]
 
|license  = -
 
|license  = -
 
}}
 
}}
  
 
= Introduction =
 
= Introduction =
[http://mgltools.scripps.edu/packages/MSMS/ MSMS] is an excellent tool for computing protein solvent excluded surface (SES). MSMS Plugin for PyMOL provides a graphical user interface for running MSMS and displaying its results in PyMOL. MSMS Plugin can be obtained from: http://www.biotec.tu-dresden.de/~hongboz/msms_pymol/msms_pymol.html
+
[http://mgltools.scripps.edu/packages/MSMS/ MSMS] is an excellent tool for computing protein solvent excluded surface (SES). MSMS Plugin for PyMOL provides a graphical user interface for running MSMS and displaying its results in PyMOL. Most recent MSMS Plugin code can be obtained from [https://github.com/hongbo-zhu-cn/Pymol-script-repo/blob/master/plugins/msms.py this link].
  
Only works in Linux, since '''pdb_to_xyzrn''' is a shell script.
+
Only works in Linux, since '''pdb_to_xyzrn''' is a shell script. Windows users please contact author for a script replacing '''pdb_to_xyzrn'''.
  
= Reference =
+
= External links =
 
[[File:Example.png|400px|thumb|right|Demonstration of MSMS plugin.]]
 
[[File:Example.png|400px|thumb|right|Demonstration of MSMS plugin.]]
 
+
* Most recent code on github: [https://github.com/hongbo-zhu-cn/Pymol-script-repo/blob/master/plugins/msms.py MSMS Plugin for PyMOL @ GitHub]
http://www.biotec.tu-dresden.de/~hongboz/msms_pymol/msms_pymol.html
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* Original site (not updated anymore): [http://www.biotec.tu-dresden.de/~hongboz/msms_pymol/msms_pymol.html MSMS Plugin for PyMOL]
  
 
[[Category:Plugins]]
 
[[Category:Plugins]]
 
[[Category:Pymol-script-repo]]
 
[[Category:Pymol-script-repo]]

Revision as of 08:56, 12 April 2012

Type PyMOL Plugin
Download plugins/msms.py
Author(s) Hongbo Zhu
License -
This code has been put under version control in the project Pymol-script-repo

Introduction

MSMS is an excellent tool for computing protein solvent excluded surface (SES). MSMS Plugin for PyMOL provides a graphical user interface for running MSMS and displaying its results in PyMOL. Most recent MSMS Plugin code can be obtained from this link.

Only works in Linux, since pdb_to_xyzrn is a shell script. Windows users please contact author for a script replacing pdb_to_xyzrn.

External links

Demonstration of MSMS plugin.