This is a read-only mirror of pymolwiki.org

Difference between revisions of "Main Page"

From PyMOL Wiki
Jump to navigation Jump to search
(fellows)
m (2 revisions)
(No difference)

Revision as of 03:24, 10 December 2018

hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
Official Release PyMOL v2.2 has been released on July 24, 2018.
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Create

create creates a new molecule object from a selection. It can also be used to create states in an existing object.

USAGE

create name, (selection) [, source_state [, target_state ]]
  • name = object to create (or modify)
  • selection = atoms to include in the new object
  • source_state (default: 0 - copy all states)
  • target_state = int: -1 appends after last state {default: 0}

PYMOL API

cmd.create(string name, string selection, int source_state, int target_state,int discrete)

NOTES

If the source and target states are zero (default), all states will be copied. Otherwise, only the indicated states will be copied.

Target state -1 will append new states.

User Comments/Examples

EXAMPLES

<source lang="python">

  1. merging two multi-state objects with the create command
  2. obj1 has 25 states and obj2 has 40 states

load multi_state_obj1, obj1 load multi_state_obj2, obj2

  1. merge the two multi-state objects back to back into obj3
  2. 0 ..→
A Random PyMOL-generated Cover. See Covers.