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Revision as of 09:27, 19 February 2019

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Python 3 New Python 3 compatibility guide for scripts and plugins
Official Release PyMOL v2.3 has been released on February 11, 2019.
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Cartoon cylindrical helices

The cartoon_cylindrical_helices setting makes cartoon helices appear as simple cylinders.

Changed in PyMOL 2.5: Cylinders are not straight anymore but follow the actual curved shape of a helix. Straight helices are still available as mode 2.

Modes

  • 0: Off (helices will be rendered according to the cartoon property or settings like cartoon_fancy_helices)
  • 1: Curved helices (since PyMOL 2.5)
  • 2: Straight helices

Example

fetch 1bb1
set cartoon_cylindrical_helices, 1
as cartoon
set cartoon_cylindrical_helices, 1 set cartoon_cylindrical_helices, 2
File:Cartoon cylindrical helices-1.png File:Cartoon cylindrical helices-2.png

Related Settings

See Also

A Random PyMOL-generated Cover. See Covers.