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|+ style="width: 90%; font-size:190%; font-weight: bold; color:#038; text-align:center; padding: 5px; margin-bottom: 15px" | Welcome to the PyMOL Wiki
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|+ style="font-size: 1.0em; font-weight: normal; color: #FFFFFF; text-align:right; background: #B22222; padding-top:0.5em; padding-bottom: 0.25em; padding-right: 0.60em; border-top: 2px solid #B22222; border-bottom: 1px solid #fff;" |hosted by [[File:SBGridlogo2.jpg|140 px|link=https://sbgrid.org/]]
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|- style="text-align:center; font-weight:bold; color: #333; font-size: 120%"
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| We are the community-based support site for the popular molecular visualization program, [http://pymol.sf.net PyMOL].
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|+ style="font-size:210%; font-weight: bold; color:#000000; text-align:center; padding: 5px; margin-bottom: 4px;" | Welcome to the PyMOL Wiki!
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|- style="text-align:center; font-weight: normal; color: #000000; font-size: 120%; font-family: sans-serif;"
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| The community-run support site for the [http://pymol.org PyMOL] molecular viewer.
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|- style="text-align:center; font-weight:normal; color: #000000; font-size: 120%; font-family: sans-serif;"
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| To request a new account, email SBGrid at:  accounts (@) sbgrid dot org
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| style="font-size: 1.1em; font-weight: normal; color #48A2B4; padding: 0.5em 1em 0.5em 3em;"|'''[[:Category:Tutorials|Tutorials]]''' || '''[[TOPTOC|Table of Contents]]''' || '''[[:Category:Commands|Commands]]'''
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| style="background:#E6EFFF; color:#333; font-size: 110%; padding: 4.5px"| New users are encouraged to [[Special:Userlogin|join]]. Feel free to add any appropriate content; make an account and get started!
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| style="font-size: 1.1em; font-weight: normal; color #48A2B4; padding: 0.5em 1em 0.5em 3em;"|'''[[:Category:Script_Library|Script Library]]''' || '''[[:Category:Plugins|Plugins]]''' || '''[[:Category:FAQ|FAQ]]'''
 
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| style="font-size: 1.1em; font-weight: normal; color #48A2B4; padding: 0.5em 1em 0.5em 3em;"|'''[[Gallery]]''' | '''[[Covers]]'''
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||'''[[CheatSheet|PyMOL Cheat Sheet]]''' (''[[Media:PymolRef.pdf|PDF]]'')
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||'''[[PyMOL_mailing_list|Getting Help]]'''
 
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| [[TOPTOC|'''Table of Contents''']]
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|| [[Special:Allpages|Index of all pages]]
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|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
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|| '''PyMOL Cheat Sheet: [[Media:PymolRef.pdf|PDF]] [[CheatSheet|Wiki Page]]
 
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| [[:Category:Tutorials|Tutorials]]
 
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|| '''Settings''': [[Settings|All]] [[:Category:Settings|Documented]]
 
 
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| [[:Category:Script_Library|'''Script Library''']]
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! Official Release
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| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
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|| [[:Special:Categories| See All Categories]]
 
 
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| [[:Category:FAQ|Frequently Asked Questions]]
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! Python 3
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|| [[PyMolWiki:Community_Portal|'''How to get involved!''']]
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| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
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| [https://pymol.org/fellowship New PyMOL fellows announced for 2018-2019]
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|+ style="text-align: left; font-weight:bold; font-size:150%; color:#333; background: #EFE6FF; padding:10px; border: 1px solid #333" | News and Updates ([[Older_News|archive]])
 
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| [[Plugins Tutorial]] updated for PyQt5
 
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! New Plugin
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| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
 
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| style="padding: 3px 5px 10px 15px;"| ♦ [http://www.google.com/analytics/ Google Analytics] cookies/tracking added to the wiki.  We're just doing hit counts and watching what people do so we can improve the wiki.
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! Selection keywords
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| New [[Selection Algebra|polymer.protein and polymer.nucleic]] selection keywords. Thanks everyone who participated in the [https://goo.gl/forms/r0Ck03VTytZQxN4A2 poll]!
 
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| style="padding: 3px 5px 10px 15px;"| ♦ [[CheatSheet|PyMOL Cheat Sheet]] (reference card) has been donated.  It's also posted in the table above for quick access.
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| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.5]] is an updated version of channel analysis software in PyMOL
 
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| style="padding: 3px 5px 10px 15px;"| ♦ '''[[Gsoc2008|Google Summer of Code 2008 for PyMOL]]''' has been created.  '''Update:''' PyMOL wasn't chosen, so this page is now about ideas for improving PyMOL.
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| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
 
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| style="padding: 3px 5px 10px 15px;"| ♦ Added a special category/section for active PyMOL [[:Category:Tutorials|Tutorials]].  These are pages not just with information, but easy to understand, step-by-step pages from which to learn.
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| See [[Older_News|Older News]].
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|valign="bottom" width="150px" style="padding: 0 20px 20px 0" |[[Image:refcard.png|155px]] Screenshot of the donated [[CheatSheet|PyMOL reference card]].
 
 
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| style="padding: 3px 5px 10px 15px;"| &diams; [[ImmersiveViz]] -- Headtracking user interface for PyMOL  (watch the video)!
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| style="padding: 3px 5px 10px 15px;"| &diams; [http://ase-web.rit.edu/~ez-viz/ProMOL_dl.html ProMOL] plugin added.  Catalytic site prediction, other tools.  Redirects to website.
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|width="150px" style="padding: 0 20px 20px 0; text-align:left" |[[Image:COLORAMA-screenshot.jpg|125px]] Screenshot of [[Colorama]].
 
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Latest revision as of 03:21, 22 June 2021

hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Check Key

Type Python Script
Download check_key.py
Author(s) Sean M. Law
License -
This code has been put under version control in the project Pymol-script-repo

DESCRIPTION

A simple script used to check if a given key is valid for for the Set Key command. This is useful when the user would like to use a keyboard key as shortcut/hotkey in their script but need to check if the key is a valid one.

USAGE

load the script using the run command 

check_key (keystroke)

If the key specified is a valid one as defined in Set Key then it returns the value of the keystroke. Otherwise, it returns None.

For an example that calls this script, see Jump.

PyMOL API

<source lang="python"> from pymol import cmd import re

allowed_keys=re.compile('(F1|F2|left|right|pgup|pgdn|home|insert|(CTRL-[A-Z])|ALT-[A-Z0-9])')

def check_key (keystroke): 

   """
   Author Sean M. Law
   University of Michigan
   seanlaw_(at)_umich_dot_edu
   """

   keystroke=keystroke.strip('\"\)
   out=allowed_keys.search(keystroke)

..→
A Random PyMOL-generated Cover. See Covers.


Retrieved from "http://wiki.pymol.org/index.php?title=Main_Page&oldid=14896"