Main Page

hosted by

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

To request a new account, email SBGrid at: accounts (@) sbgrid dot org

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates Official Release PyMOL v2.4 has been released on May 20, 2020. Python 3 New Python 3 compatibility guide for scripts and plugins Official Release PyMOL v2.3 has been released on February 11, 2019. POSF New PyMOL fellows announced for 2018-2019 Tutorial Plugins Tutorial updated for PyQt5 New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures. Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll! Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons Older News See Older News.

Did you know... Map set Map_set created this consensus volume representation of aligned ligands bound to kinases. See example below. Map_set provides a number of common operations on and between maps. For example, with Map_set you can add two maps together or create a consensus map from a series of maps or even take a difference map. Usage map_set name, operator, operands, target_state, source_state operator may be, average copy difference maximum minimum sum unique Examples # add 3 maps map_set my_sum, sum, map1 map2 map3 # calculate the average map map_set my_avg, average, map1 map2 map3 Detailed Example This example shows you how to create a consensus map of the bound ligand in a conserved pocket. <source lang="python"> fetch some similar proteins from the PDB fetch 1oky 1h1w 1okz 1uu3 1uu7 1uu8 1uu9 1uvr, async=0 align them all to 1oky; their ligands should all now be aligned alignto ..→

A Random PyMOL-generated Cover. See Covers.