This is a read-only mirror of pymolwiki.org

Difference between revisions of "Intra rms cur"

From PyMOL Wiki
Jump to navigation Jump to search
 
m (10 revisions)
 
(11 intermediate revisions by 5 users not shown)
Line 1: Line 1:
===DESCRIPTION===
+
 
    "intra_rms_cur" calculates rms values for all states of an object
+
'''intra_rms_cur''' calculates rms values for all states of an object over an atom selection relative to the indicated state without performing any fitting.  The rms values are returned as a python array.
  over an atom selection relative to the indicated state without
 
  performing any fitting.  The rms values are returned
 
  as a python array.
 
 
   
 
   
 
===PYMOL API===
 
===PYMOL API===
    cmd.intra_rms_cur( string selection, int state)
+
<source lang="python">
+
cmd.intra_rms_cur( string selection, int state)
 +
</source>
 +
 
 
===PYTHON EXAMPLE===
 
===PYTHON EXAMPLE===
  from pymol import cmd
+
<source lang="python">
  rms = cmd.intra_rms_cur("(name ca)",1)
+
from pymol import cmd
 +
rms = cmd.intra_rms_cur("(name ca)",1)
 +
</source>
  
 
===USER EXAMPLES/COMMENTS===
 
===USER EXAMPLES/COMMENTS===
+
See [[Rms]] for selection caveats for this group of commands.
 +
 
 
===SEE ALSO===
 
===SEE ALSO===
    [[Cmd fit]], [[Cmd rms]], [[Cmd rms_cur]], [[Cmd intra_fit]], [[Cmd intra_rms]], [[Cmd pair_fit]]
+
[[Fit]], [[Rms]], [[Rms_Cur]], [[Intra_Fit]], [[Intra_Rms]], [[Pair_Fit]]  
 
  
[[Category:Commands|intra_rms_cur]]
+
[[Category:Commands|Intra Rms Cur]]
 +
[[Category:States|Intra Rms Cur]]
 +
[[Category:Structure_Alignment|Intra Rms Cur]]

Latest revision as of 03:06, 28 March 2014

intra_rms_cur calculates rms values for all states of an object over an atom selection relative to the indicated state without performing any fitting. The rms values are returned as a python array.

PYMOL API

cmd.intra_rms_cur( string selection, int state)

PYTHON EXAMPLE

from pymol import cmd
rms = cmd.intra_rms_cur("(name ca)",1)

USER EXAMPLES/COMMENTS

See Rms for selection caveats for this group of commands.

SEE ALSO

Fit, Rms, Rms_Cur, Intra_Fit, Intra_Rms, Pair_Fit