Difference between revisions of "Intra fit"

Revision as of 18:32, 9 January 2006

intra_fit fits all states of an object to an atom selection in the specified state. It returns the rms values to python as an array.

intra_fit (selection),state

cmd.intra_fit( string selection, int state )

intra_fit ( name ca )

from pymol import cmd
rms = cmd.intra_fit("(name ca)",1)

See Intra_Rms for selection caveats for this group of commands.

@@ Line 1: / Line 1: @@
 ===DESCRIPTION===
-    "intra_fit" fits all states of an object to an atom selection
+'''intra_fit''' fits all states of an object to an atom selection in the specified state.  It returns the rms values to python as an array.
-   in the specified state.  It returns the rms values to python
-   as an array.
 ===USAGE===
-    intra_fit (selection),state
+ intra_fit (selection),state
 ===PYMOL API===
-    cmd.intra_fit( string selection, int state )
+<source lang="python">
+cmd.intra_fit( string selection, int state )
+</source>
 ===EXAMPLES===
-    intra_fit ( name ca )
+ intra_fit ( name ca )
 ===PYTHON EXAMPLE===
 <source lang="python">
-   from pymol import cmd
+from pymol import cmd
-   rms = cmd.intra_fit("(name ca)",1)
+rms = cmd.intra_fit("(name ca)",1)
 </source>
 ===USER EXAMPLES===
+===USER COMMENTS===
+See [[Intra_Rms]] for selection caveats for this group of commands.
 ===SEE ALSO===
+[[Fit]], [[Rms]], [[Rms_Cur]], [[Intra_Rms]], [[Intra_Rms_Cur]], [[Pair_Fit]], [[Align]]
-   [[Cmd fit]], [[Cmd rms]], [[Cmd rms_cur]], [[Cmd intra_rms]], [[Cmd intra_rms_cur]], [[Cmd pair_fit]]
 [[Category:Commands|intra_fit]]