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==Example==
 
==Example==
 
<source lang="python">
 
<source lang="python">
load 1brv.pdb # Get it locally first by e.g. using the Plugin: "PDB Loader Service"
+
# fetch a PDB and show it in multiple states; this one
 +
# line does the work of the next 6 lines.
 +
fetch 1nmr
 +
 
 +
# this is older code, use the above code which is newer
 +
import urllib2
 +
pdbCode = '1BRV'
 +
pdbUrl = 'http://www.rcsb.org/pdb/downloadFile.do?fileFormat=pdb&compression=NO&structureId='+pdbCode
 +
pdbFile = urllib2.urlopen(pdbUrl)
 +
pdbContent = pdbFile.read()
 +
cmd.read_pdbstr(pdbContent, pdbCode)
 +
 
 
set all_states, on
 
set all_states, on
 
</source>
 
</source>
 +
 +
This shows the effect of turning on/off the '''all_states''' setting used with the script above.
 +
<gallery>
 +
Image:All_states_on.png|set all_states, on
 +
Image:All_states_off.png|set all_states, off
 +
</gallery>
 +
 +
== User Notes ==
 +
* There was an error with importing ensembles of ensembles files (complex MOL2 files) before revision 3541.  If you experience this problem, update to 3541 or later.
 +
 +
== See Also ==
 +
[[Split_States]]
 +
 +
[[Category:Settings|All states]]
 +
[[Category:States]]

Latest revision as of 01:31, 28 March 2014

Overview

When set "on", this setting causes PyMOL to display all states or in NMR jargon: all the models in the ensemble. The 'default' behavior (OFF) can be overridden by placing the "set all_states, on" statement into your '.pymolrc' file, located in your login directory (under all flavors of unix).

Syntax

set all_states, on      
set all_states, off

Example

# fetch a PDB and show it in multiple states; this one
# line does the work of the next 6 lines.
fetch 1nmr

# this is older code, use the above code which is newer
import urllib2
pdbCode = '1BRV'
pdbUrl = 'http://www.rcsb.org/pdb/downloadFile.do?fileFormat=pdb&compression=NO&structureId='+pdbCode
pdbFile = urllib2.urlopen(pdbUrl)
pdbContent = pdbFile.read()
cmd.read_pdbstr(pdbContent, pdbCode)

set all_states, on

This shows the effect of turning on/off the all_states setting used with the script above.

User Notes

  • There was an error with importing ensembles of ensembles files (complex MOL2 files) before revision 3541. If you experience this problem, update to 3541 or later.

See Also

Split_States