This is a read-only mirror of pymolwiki.org
Get fastastr
Jump to navigation
Jump to search
cmd.get_fastastr
Do you have a pdb file which come from a modelling program?
Are you unsure about which amino sequence is in the "long" pdb file?
What you really want is to: get the FASTA string ?
Then write in pymol: print cmd.get_fastastr('all')
That will give you the sequence.