News & Updates
| fetch_host setting
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Fetch_Host has been added to allow users to download PDBs from their PDB server (pdb, pdb euro, or pdb japan) of choice.
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| Fetch
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Fetch has been updated to also load electron density maps.
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| Schrodinger Buys PyMOL
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Schrodinger has purchased PyMOL. Development, support and open-source fun to continue! Read about the sale.
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| User Movie
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One of our users has posted another interesting movie, images from which were created with PyMOL.
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| New setting
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surface_cavity_mode to change how PyMOL displays cavities.
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| Search fixed.
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Thanks to a eagle-eyed user, our search has been fixed. Please let us know if you have any search-related problems.
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| New Command
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Cache—stores information on structures, so we don't have to recompute them.
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| Warren
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News about Warren DeLano's passing may be read on Warren's memorial page.
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| Setting
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Fetch_Path—Sets the default path for the fetch command.
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| New Script
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SelInside—Creates a custom selection of all atoms spatially inside some user-defined box.
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| New Script
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ContactsNCONT—The script selects residues and atoms from the list of the contacts found by NCONT from CCP4 Program Suite
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| Fun
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PCR Rap video made with PyMOL (YouTube).
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| PyMOLWiki
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Reformatted Main Page. Some delays might occur from resizing images, but that should go away once the images are cached.
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| PyMOLWiki
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New — Search the PyMOLWiki via GoogleSearch
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| PyMOL
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PyMOL is known to work under Mac OS X 10+ (Snow Leopard) using the new Fink and incentive builds. See Installing PyMOL under Fink.
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| PyMOL
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PyMOL now has a Set command for basic settings, and a Set_bond command for bond-only settings.
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Did you know...
The DPL extension (version 2.3.0) produced a SQL statement which lead to a Database error.
The reason may be an internal error of DPL or an error which you made,
especially when using DPL options like titleregexp.
Query text is:
SELECT DISTINCT `page`.page_namespace AS page_namespace,`page`.page_title AS page_title,`page`.page_id AS page_id, `page`.page_title AS sortkey, `page`.page_counter AS page_counter FROM `page` INNER JOIN `categorylinks` AS cl0 ON `page`.page_id=cl0.cl_from AND (cl0.cl_to='Commands' OR cl0.cl_to='Plugins' OR cl0.cl_to='Script_Library' OR cl0.cl_to='Settings') WHERE 1=1 AND `page`.page_namespace IN (0) AND `page`.page_is_redirect=0 ORDER BY page_title ASC LIMIT 500 OFFSET 0
Error message is:
Unknown column 'page.page_counter' in 'field list' (data01-pymol.chw7f2hgrkps.us-west-2.rds.amazonaws.com)
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|
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The DPL extension (version 2.3.0) produced a SQL statement which lead to a Database error.
The reason may be an internal error of DPL or an error which you made,
especially when using DPL options like titleregexp.
Query text is:
SELECT DISTINCT ic.il_to, ic.il_to AS sortkey FROM `imagelinks` AS ic WHERE 1=1 AND (ic.il_from=1365) ORDER BY pl_title ASC LIMIT 500 OFFSET 0
Error message is:
Unknown column 'pl_title' in 'order clause' (data01-pymol.chw7f2hgrkps.us-west-2.rds.amazonaws.com)
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