Main Page

hosted by

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

To request a new account, email SBGrid at: accounts (@) sbgrid dot org

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates Official Release PyMOL v2.5 has been released on May 10, 2021. Python 3 New Python 3 compatibility guide for scripts and plugins POSF New PyMOL fellows announced for 2018-2019 Tutorial Plugins Tutorial updated for PyQt5 New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll! Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons Older News See Older News.

Did you know... Annocryst Type PyMOL Plugin Download plugins/annocryst.py Author(s) Anna Gerber License - This code has been put under version control in the project Pymol-script-repo Introduction AnnoCryst for PyMOL extends the functionality of PyMOL to support collaborative annotation of 3D crystallographic models. It is implemented as a plugin to PyMOL that provides an interface to browse and create annotations on structures loaded from Protein Data Bank (PDB) files. The annotations are retrieved from and stored on an annotation server using the W3C's Annotea protocol. Website: AnnoyCryst online. Example Pymol Script See userguide http://www.itee.uq.edu.au/eresearch/downloads/annocryst-pymol-user-guide.pdf Standard settings of AnnoCryst Settings <syntaxhighlight lang="text"> annotationsServerURL: http://maenad.itee.uq.edu.au:8080/Annotea/AnnoteaServlet keywordOntologyNamespace: http://www.proteinontology.info/po.owl keywordOntologyURL: http://maenad.itee.uq.edu.au/agerber/po.owl pdbRepositoryURL: http://maenad.i ..→

A Random PyMOL-generated Cover. See Covers.