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PyMol Wiki Home

You have reached the home of the PyMolWiki, a user-driven web-oriented CMS.

We provide

• updates on PyMol
• a stable user-oriented documentation base
• a thorough treatment of the PyMol program
• feature-rich scripts for general PyMol use

New Users

Welcome! New users who wish to contribute appropriate content are welcome to join. Feel free to add any appropriate content; make an account and get started!

News

PyMol

• CE Align v0.6 released. Better than before. See test case comparisons.
• Important bug fixed in CE Align v0.5 and Kabsch. Both updated.
• CE Align v0.4, code now available. See the Cealign page for changes.
• CE Align v0.1, code now available. Windows installer coming soon.
• Slerpy, a set of pymol command extensions to simplify complex movie making is now available.
• Updated the Kabsch code with a more elegant solution; fixed a small rotation bug.
• Pymol 0.99 is out! Get it here.
• A new version of APBS plugin is available on Michael Lerner's Page.
• New Beta Releases available.
• New cool ray tracing features added!

Wiki

• Added useful mini-script for re-assigning the B Factor column to something new and coloring it.
• captcha system installed.
• If you notice something out of the ordinary, please contact the admin. I updated some software.
• Settings now contains documentation on:

              - helix roundness
              - ribbon sampling
              - cartoon sampling
              - cartoon highlight coloring
              - cartoon color blending vs discrete colors
              - and more!  now 48 documented (with examples); just 470 to go....

• SURFNET information on reading surfaces from other programs added.
• Two new Plugins have been added, NsSNP Loader and Proxy Config.
• Added a page that lists all PyMol settings. We need to start documenting these.
• MAC_Install page has been developed. It describes pymol and apbs issues specific to Mac OS X.
• APBS page has been established.
• APBS How to set this up on OS X and on Linux has been started but needs contributions.
  • Added info on installing APBS from source

News Archive

• See our Older_News.

Links of Interest

• Top Level Table of Contents
• Frequently Asked Questions -- new!
• How to get involved! -- read me if you want to add something
• Script Library -- add one! (rTools info!)
• PyMol Commands (>130 documented!)
• PyMol Settings (6 newly documented; only 470 to go...)
• All Pages
• Plugins
• See All Categories